Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
NPHP1O15259 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
NPHP1O15259 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
NPHP1O15259 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC23.29■■□□□ 1.32
NPHP1O15259 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
NPHP1O15259 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC23.29■■□□□ 1.32
NPHP1O15259 AC120114.3-201ENST00000611923 658 ntBASIC23.29■■□□□ 1.32
NPHP1O15259 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC23.29■■□□□ 1.32
NPHP1O15259 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
NPHP1O15259 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
NPHP1O15259 AC006333.2-201ENST00000607957 2099 ntBASIC23.29■■□□□ 1.32
NPHP1O15259 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
NPHP1O15259 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
NPHP1O15259 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
NPHP1O15259 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
NPHP1O15259 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
NPHP1O15259 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
NPHP1O15259 TEX21P-204ENST00000641479 1693 ntBASIC23.28■■□□□ 1.32
NPHP1O15259 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC23.28■■□□□ 1.32
NPHP1O15259 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
NPHP1O15259 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC23.28■■□□□ 1.32
NPHP1O15259 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC23.28■■□□□ 1.32
NPHP1O15259 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC23.28■■□□□ 1.32
NPHP1O15259 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC23.28■■□□□ 1.32
NPHP1O15259 PENK-208ENST00000523051 772 ntTSL 5 BASIC23.28■■□□□ 1.32
NPHP1O15259 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 AC024563.2-201ENST00000603282 481 ntBASIC23.28■■□□□ 1.32
NPHP1O15259 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC23.28■■□□□ 1.32
NPHP1O15259 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC23.28■■□□□ 1.32
NPHP1O15259 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
NPHP1O15259 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC23.28■■□□□ 1.32
NPHP1O15259 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
NPHP1O15259 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP1O15259 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP1O15259 PCDHAC2-203ENST00000615316 3011 ntBASIC23.27■■□□□ 1.32
NPHP1O15259 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP1O15259 MRPL3P1-201ENST00000400109 1033 ntBASIC23.27■■□□□ 1.32
NPHP1O15259 MINOS1P3-201ENST00000457048 203 ntBASIC23.27■■□□□ 1.32
NPHP1O15259 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC23.27■■□□□ 1.32
NPHP1O15259 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
NPHP1O15259 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC23.27■■□□□ 1.32
NPHP1O15259 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC23.27■■□□□ 1.32
NPHP1O15259 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC23.27■■□□□ 1.32
NPHP1O15259 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
NPHP1O15259 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
NPHP1O15259 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
NPHP1O15259 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP1O15259 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
NPHP1O15259 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC23.26■■□□□ 1.31
NPHP1O15259 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC23.26■■□□□ 1.31
NPHP1O15259 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP1O15259 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP1O15259 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
NPHP1O15259 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP1O15259 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC23.26■■□□□ 1.31
NPHP1O15259 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC23.26■■□□□ 1.31
NPHP1O15259 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP1O15259 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP1O15259 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP1O15259 IGHGP-201ENST00000390555 1178 ntBASIC23.26■■□□□ 1.31
NPHP1O15259 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP1O15259 AC106795.1-205ENST00000512851 1056 ntBASIC23.26■■□□□ 1.31
NPHP1O15259 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP1O15259 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC23.26■■□□□ 1.31
NPHP1O15259 AC006538.3-201ENST00000612495 578 ntBASIC23.26■■□□□ 1.31
NPHP1O15259 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP1O15259 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
NPHP1O15259 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP1O15259 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC23.26■■□□□ 1.31
NPHP1O15259 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.26■■□□□ 1.31
NPHP1O15259 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC23.26■■□□□ 1.31
NPHP1O15259 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
NPHP1O15259 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
NPHP1O15259 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP1O15259 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP1O15259 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP1O15259 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP1O15259 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP1O15259 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
NPHP1O15259 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC23.25■■□□□ 1.31
NPHP1O15259 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC23.25■■□□□ 1.31
NPHP1O15259 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC23.25■■□□□ 1.31
NPHP1O15259 PPOX-214ENST00000535223 664 ntTSL 3 BASIC23.25■■□□□ 1.31
NPHP1O15259 ABR-204ENST00000543210 1049 ntTSL 2 BASIC23.25■■□□□ 1.31
NPHP1O15259 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC23.25■■□□□ 1.31
NPHP1O15259 ABR-217ENST00000572441 563 ntTSL 4 BASIC23.25■■□□□ 1.31
NPHP1O15259 AC004263.2-201ENST00000617183 678 ntBASIC23.25■■□□□ 1.31
NPHP1O15259 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms