Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 PAN3-AS1-201ENST00000563843 1351 ntBASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 MED16-201ENST00000269814 1199 ntTSL 5 BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 RPS2P28-201ENST00000314255 741 ntBASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.33■■□□□ 1.33
RTCBQ9Y3I0 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC23.33■■□□□ 1.32
RTCBQ9Y3I0 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC23.33■■□□□ 1.32
RTCBQ9Y3I0 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
RTCBQ9Y3I0 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
RTCBQ9Y3I0 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.33■■□□□ 1.32
RTCBQ9Y3I0 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC23.33■■□□□ 1.32
RTCBQ9Y3I0 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC23.33■■□□□ 1.32
RTCBQ9Y3I0 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
RTCBQ9Y3I0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
RTCBQ9Y3I0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 AC005336.2-201ENST00000593183 939 ntBASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTCBQ9Y3I0 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 AC005104.2-201ENST00000427818 678 ntBASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
RTCBQ9Y3I0 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 AC113404.2-201ENST00000507884 177 ntBASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 GZMM-202ENST00000592501 941 ntTSL 3 BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RTCBQ9Y3I0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 AC141586.3-201ENST00000562166 1838 ntBASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 PGAM5P1-201ENST00000518923 814 ntBASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 AC112777.1-201ENST00000540175 1423 ntBASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC23.29■■□□□ 1.32
RTCBQ9Y3I0 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms