Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.25■□□□□ 0.67
CDCA3Q99618 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 HEIH-201ENST00000623091 1652 ntBASIC19.25■□□□□ 0.67
CDCA3Q99618 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CDCA3Q99618 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
CDCA3Q99618 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CDCA3Q99618 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.25■□□□□ 0.67
CDCA3Q99618 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
CDCA3Q99618 MIR149-201ENST00000384879 89 ntBASIC19.25■□□□□ 0.67
CDCA3Q99618 AC005104.2-201ENST00000427818 678 ntBASIC19.25■□□□□ 0.67
CDCA3Q99618 HNRNPDP1-201ENST00000439535 754 ntBASIC19.25■□□□□ 0.67
CDCA3Q99618 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.25■□□□□ 0.67
CDCA3Q99618 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.25■□□□□ 0.67
CDCA3Q99618 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.25■□□□□ 0.67
CDCA3Q99618 LINC01521-201ENST00000504184 1943 ntBASIC19.25■□□□□ 0.67
CDCA3Q99618 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDCA3Q99618 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CDCA3Q99618 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.24■□□□□ 0.67
CDCA3Q99618 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.24■□□□□ 0.67
CDCA3Q99618 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.24■□□□□ 0.67
CDCA3Q99618 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.24■□□□□ 0.67
CDCA3Q99618 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.24■□□□□ 0.67
CDCA3Q99618 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CDCA3Q99618 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.24■□□□□ 0.67
CDCA3Q99618 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.24■□□□□ 0.67
CDCA3Q99618 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC19.24■□□□□ 0.67
CDCA3Q99618 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.24■□□□□ 0.67
CDCA3Q99618 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.24■□□□□ 0.67
CDCA3Q99618 AC027601.4-201ENST00000611259 610 ntBASIC19.24■□□□□ 0.67
CDCA3Q99618 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CDCA3Q99618 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CDCA3Q99618 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CDCA3Q99618 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.24■□□□□ 0.67
CDCA3Q99618 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDCA3Q99618 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CDCA3Q99618 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CDCA3Q99618 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.23■□□□□ 0.67
CDCA3Q99618 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.23■□□□□ 0.67
CDCA3Q99618 AC068472.1-201ENST00000474589 881 ntBASIC19.23■□□□□ 0.67
CDCA3Q99618 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.23■□□□□ 0.67
CDCA3Q99618 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.23■□□□□ 0.67
CDCA3Q99618 AP001269.4-201ENST00000609611 512 ntBASIC19.23■□□□□ 0.67
CDCA3Q99618 FAM197Y3-203ENST00000618346 717 ntBASIC19.23■□□□□ 0.67
CDCA3Q99618 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.23■□□□□ 0.67
CDCA3Q99618 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.23■□□□□ 0.67
CDCA3Q99618 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CDCA3Q99618 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDCA3Q99618 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.22■□□□□ 0.67
CDCA3Q99618 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.22■□□□□ 0.67
CDCA3Q99618 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.22■□□□□ 0.67
CDCA3Q99618 INTS4P1-201ENST00000438455 1935 ntBASIC19.22■□□□□ 0.67
CDCA3Q99618 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.22■□□□□ 0.67
CDCA3Q99618 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDCA3Q99618 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.22■□□□□ 0.67
CDCA3Q99618 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.22■□□□□ 0.67
CDCA3Q99618 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.22■□□□□ 0.67
CDCA3Q99618 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.22■□□□□ 0.67
CDCA3Q99618 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.22■□□□□ 0.67
CDCA3Q99618 AL591424.1-201ENST00000442569 1213 ntBASIC19.22■□□□□ 0.67
CDCA3Q99618 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.22■□□□□ 0.67
CDCA3Q99618 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.22■□□□□ 0.67
CDCA3Q99618 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms