Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 MINOS1P3-201ENST00000457048 203 ntBASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 AC034105.1-201ENST00000563488 319 ntBASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CCDC88AQ3V6T2 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 AFG3L1P-217ENST00000557444 2447 ntBASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 RN7SL606P-201ENST00000472779 293 ntBASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 KRT8P7-201ENST00000533003 1432 ntBASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 PRKN-208ENST00000610470 531 ntTSL 2 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 PRKN-209ENST00000612485 225 ntTSL 5 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC88AQ3V6T2 PCDHAC2-203ENST00000615316 3011 ntBASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 MIR564-202ENST00000385049 94 ntBASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 AP001160.2-201ENST00000596071 487 ntBASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 IGHV3-41-201ENST00000613121 348 ntBASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC88AQ3V6T2 MIR940-201ENST00000401276 94 ntBASIC22.64■■□□□ 1.22
CCDC88AQ3V6T2 URGCP-206ENST00000446958 365 ntTSL 2 BASIC22.64■■□□□ 1.22
CCDC88AQ3V6T2 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC22.64■■□□□ 1.22
CCDC88AQ3V6T2 AC011840.4-201ENST00000578471 627 ntBASIC22.64■■□□□ 1.22
CCDC88AQ3V6T2 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC22.64■■□□□ 1.22
CCDC88AQ3V6T2 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CCDC88AQ3V6T2 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC22.64■■□□□ 1.22
CCDC88AQ3V6T2 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
CCDC88AQ3V6T2 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC22.64■■□□□ 1.22
CCDC88AQ3V6T2 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CCDC88AQ3V6T2 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CCDC88AQ3V6T2 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC88AQ3V6T2 MTMR9LP-203ENST00000426597 1545 ntBASIC22.64■■□□□ 1.21
CCDC88AQ3V6T2 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC22.64■■□□□ 1.21
CCDC88AQ3V6T2 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC88AQ3V6T2 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
CCDC88AQ3V6T2 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC88AQ3V6T2 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC22.64■■□□□ 1.21
CCDC88AQ3V6T2 CFL1-212ENST00000531413 636 ntTSL 3 BASIC22.64■■□□□ 1.21
CCDC88AQ3V6T2 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC88AQ3V6T2 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 AL353692.3-201ENST00000407031 1396 ntBASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC88AQ3V6T2 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC22.62■■□□□ 1.21
CCDC88AQ3V6T2 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms