Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.12■□□□□ 0.49
SDC3O75056 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.12■□□□□ 0.49
SDC3O75056 TSPY19P-201ENST00000418461 509 ntBASIC18.12■□□□□ 0.49
SDC3O75056 TSPY18P-201ENST00000441642 509 ntBASIC18.12■□□□□ 0.49
SDC3O75056 FAAHP1-202ENST00000446499 1238 ntBASIC18.12■□□□□ 0.49
SDC3O75056 AC104819.1-201ENST00000504587 486 ntBASIC18.12■□□□□ 0.49
SDC3O75056 AC074051.2-201ENST00000565115 352 ntBASIC18.12■□□□□ 0.49
SDC3O75056 AC012615.1-201ENST00000565797 1299 ntBASIC18.12■□□□□ 0.49
SDC3O75056 AL121772.3-201ENST00000610840 674 ntBASIC18.12■□□□□ 0.49
SDC3O75056 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.12■□□□□ 0.49
SDC3O75056 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
SDC3O75056 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SDC3O75056 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SDC3O75056 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDC3O75056 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.11■□□□□ 0.49
SDC3O75056 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.11■□□□□ 0.49
SDC3O75056 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.11■□□□□ 0.49
SDC3O75056 AC090616.6-201ENST00000582640 721 ntBASIC18.11■□□□□ 0.49
SDC3O75056 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.11■□□□□ 0.49
SDC3O75056 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.11■□□□□ 0.49
SDC3O75056 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SDC3O75056 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SDC3O75056 AL031008.1-201ENST00000619963 541 ntBASIC18.11■□□□□ 0.49
SDC3O75056 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.11■□□□□ 0.49
SDC3O75056 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.11■□□□□ 0.49
SDC3O75056 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SDC3O75056 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDC3O75056 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDC3O75056 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SDC3O75056 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SDC3O75056 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.11■□□□□ 0.49
SDC3O75056 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SDC3O75056 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDC3O75056 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDC3O75056 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDC3O75056 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
SDC3O75056 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
SDC3O75056 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDC3O75056 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SDC3O75056 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SDC3O75056 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.1■□□□□ 0.49
SDC3O75056 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
SDC3O75056 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDC3O75056 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.1■□□□□ 0.49
SDC3O75056 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SDC3O75056 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDC3O75056 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SDC3O75056 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDC3O75056 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.1■□□□□ 0.49
SDC3O75056 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDC3O75056 KRT17P6-201ENST00000453795 1220 ntBASIC18.1■□□□□ 0.49
SDC3O75056 AC009078.2-202ENST00000463353 338 ntBASIC18.1■□□□□ 0.49
SDC3O75056 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.1■□□□□ 0.49
SDC3O75056 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.1■□□□□ 0.49
SDC3O75056 GPR32P1-201ENST00000601788 811 ntBASIC18.1■□□□□ 0.49
SDC3O75056 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.1■□□□□ 0.49
SDC3O75056 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.1■□□□□ 0.49
SDC3O75056 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SDC3O75056 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.1■□□□□ 0.49
SDC3O75056 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.1■□□□□ 0.49
SDC3O75056 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDC3O75056 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDC3O75056 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDC3O75056 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.09■□□□□ 0.49
SDC3O75056 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SDC3O75056 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDC3O75056 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDC3O75056 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDC3O75056 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SDC3O75056 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.09■□□□□ 0.49
SDC3O75056 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SDC3O75056 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDC3O75056 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.09■□□□□ 0.49
SDC3O75056 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SDC3O75056 AC079781.3-201ENST00000449110 356 ntBASIC18.09■□□□□ 0.49
SDC3O75056 KRT18P31-201ENST00000506277 1292 ntBASIC18.09■□□□□ 0.49
SDC3O75056 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.09■□□□□ 0.49
SDC3O75056 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
SDC3O75056 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.09■□□□□ 0.49
SDC3O75056 LINC01711-201ENST00000598340 967 ntBASIC18.09■□□□□ 0.49
SDC3O75056 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.09■□□□□ 0.49
SDC3O75056 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.09■□□□□ 0.49
SDC3O75056 AC068587.9-201ENST00000641814 219 ntBASIC18.09■□□□□ 0.49
SDC3O75056 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDC3O75056 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.09■□□□□ 0.49
SDC3O75056 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDC3O75056 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDC3O75056 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDC3O75056 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDC3O75056 AC099343.3-201ENST00000605834 2503 ntBASIC18.09■□□□□ 0.49
SDC3O75056 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.09■□□□□ 0.49
SDC3O75056 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms