Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
COL6A5A8TX70 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
COL6A5A8TX70 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL6A5A8TX70 AP000344.2-201ENST00000512987 629 ntBASIC14.33□□□□□ -0.11
COL6A5A8TX70 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
COL6A5A8TX70 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC14.33□□□□□ -0.11
COL6A5A8TX70 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC14.33□□□□□ -0.11
COL6A5A8TX70 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A5A8TX70 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A5A8TX70 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A5A8TX70 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A5A8TX70 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A5A8TX70 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A5A8TX70 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
COL6A5A8TX70 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A5A8TX70 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A5A8TX70 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A5A8TX70 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL6A5A8TX70 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL6A5A8TX70 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A5A8TX70 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A5A8TX70 PMS2P4-201ENST00000412466 1052 ntBASIC14.33□□□□□ -0.12
COL6A5A8TX70 AC109322.1-201ENST00000524499 1264 ntBASIC14.33□□□□□ -0.12
COL6A5A8TX70 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.33□□□□□ -0.12
COL6A5A8TX70 AC018845.2-201ENST00000568326 409 ntBASIC14.33□□□□□ -0.12
COL6A5A8TX70 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A5A8TX70 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A5A8TX70 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
COL6A5A8TX70 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A5A8TX70 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A5A8TX70 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 AC055876.3-201ENST00000431496 288 ntBASIC14.32□□□□□ -0.12
COL6A5A8TX70 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 AC138649.4-201ENST00000612222 287 ntBASIC14.32□□□□□ -0.12
COL6A5A8TX70 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 AC133561.1-201ENST00000568600 2415 ntBASIC14.32□□□□□ -0.12
COL6A5A8TX70 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 AP005018.1-201ENST00000525475 301 ntBASIC14.32□□□□□ -0.12
COL6A5A8TX70 AC025678.2-201ENST00000562061 970 ntBASIC14.32□□□□□ -0.12
COL6A5A8TX70 AL031432.2-201ENST00000566714 459 ntBASIC14.32□□□□□ -0.12
COL6A5A8TX70 AL928711.1-201ENST00000570165 459 ntBASIC14.32□□□□□ -0.12
COL6A5A8TX70 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 ZNF815P-204ENST00000434898 1737 ntBASIC14.32□□□□□ -0.12
COL6A5A8TX70 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.32□□□□□ -0.12
COL6A5A8TX70 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A5A8TX70 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A5A8TX70 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A5A8TX70 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 TCAP-202ENST00000578283 583 ntTSL 5 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 AC006333.2-201ENST00000607957 2099 ntBASIC14.31□□□□□ -0.12
COL6A5A8TX70 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A5A8TX70 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A5A8TX70 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A5A8TX70 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A5A8TX70 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A5A8TX70 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 AC112777.1-201ENST00000540175 1423 ntBASIC14.31□□□□□ -0.12
COL6A5A8TX70 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A5A8TX70 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A5A8TX70 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms