Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC24.48■■□□□ 1.51
COL18A1P39060 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
COL18A1P39060 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC24.48■■□□□ 1.51
COL18A1P39060 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
COL18A1P39060 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
COL18A1P39060 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
COL18A1P39060 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
COL18A1P39060 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC24.48■■□□□ 1.51
COL18A1P39060 AC112777.1-201ENST00000540175 1423 ntBASIC24.48■■□□□ 1.51
COL18A1P39060 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC24.48■■□□□ 1.51
COL18A1P39060 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC24.48■■□□□ 1.51
COL18A1P39060 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
COL18A1P39060 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
COL18A1P39060 PIN1-206ENST00000587625 878 ntTSL 2 BASIC24.48■■□□□ 1.51
COL18A1P39060 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC24.48■■□□□ 1.51
COL18A1P39060 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
COL18A1P39060 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
COL18A1P39060 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
COL18A1P39060 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC24.48■■□□□ 1.51
COL18A1P39060 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC24.48■■□□□ 1.51
COL18A1P39060 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC24.48■■□□□ 1.51
COL18A1P39060 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
COL18A1P39060 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC24.48■■□□□ 1.51
COL18A1P39060 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
COL18A1P39060 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC24.47■■□□□ 1.51
COL18A1P39060 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
COL18A1P39060 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL18A1P39060 MIR149-201ENST00000384879 89 ntBASIC24.47■■□□□ 1.51
COL18A1P39060 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL18A1P39060 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
COL18A1P39060 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC24.47■■□□□ 1.51
COL18A1P39060 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL18A1P39060 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
COL18A1P39060 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
COL18A1P39060 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL18A1P39060 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL18A1P39060 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC24.47■■□□□ 1.51
COL18A1P39060 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL18A1P39060 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC24.47■■□□□ 1.51
COL18A1P39060 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL18A1P39060 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
COL18A1P39060 THAP5-204ENST00000438865 868 ntTSL 2 BASIC24.47■■□□□ 1.51
COL18A1P39060 RPL13AP23-201ENST00000480739 586 ntBASIC24.47■■□□□ 1.51
COL18A1P39060 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC24.47■■□□□ 1.51
COL18A1P39060 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
COL18A1P39060 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
COL18A1P39060 PAN3-AS1-201ENST00000563843 1351 ntBASIC24.46■■□□□ 1.51
COL18A1P39060 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
COL18A1P39060 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
COL18A1P39060 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC24.46■■□□□ 1.51
COL18A1P39060 INTS4P1-201ENST00000438455 1935 ntBASIC24.46■■□□□ 1.51
COL18A1P39060 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
COL18A1P39060 RCN1P2-201ENST00000398357 915 ntBASIC24.46■■□□□ 1.51
COL18A1P39060 MIR1233-2-201ENST00000408138 82 ntBASIC24.46■■□□□ 1.51
COL18A1P39060 MIR1233-1-201ENST00000408722 82 ntBASIC24.46■■□□□ 1.51
COL18A1P39060 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
COL18A1P39060 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC24.46■■□□□ 1.51
COL18A1P39060 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC24.46■■□□□ 1.51
COL18A1P39060 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
COL18A1P39060 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC24.46■■□□□ 1.51
COL18A1P39060 PRKN-208ENST00000610470 531 ntTSL 2 BASIC24.46■■□□□ 1.51
COL18A1P39060 PRKN-209ENST00000612485 225 ntTSL 5 BASIC24.46■■□□□ 1.51
COL18A1P39060 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
COL18A1P39060 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC24.46■■□□□ 1.51
COL18A1P39060 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC24.46■■□□□ 1.51
COL18A1P39060 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
COL18A1P39060 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC24.46■■□□□ 1.51
COL18A1P39060 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.51
COL18A1P39060 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
COL18A1P39060 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
COL18A1P39060 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
COL18A1P39060 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
COL18A1P39060 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
COL18A1P39060 BX842568.4-201ENST00000421222 227 ntBASIC24.45■■□□□ 1.5
COL18A1P39060 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL18A1P39060 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC24.45■■□□□ 1.5
COL18A1P39060 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC24.45■■□□□ 1.5
COL18A1P39060 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
COL18A1P39060 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL18A1P39060 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
COL18A1P39060 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC24.45■■□□□ 1.5
COL18A1P39060 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC24.45■■□□□ 1.5
COL18A1P39060 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC24.44■■□□□ 1.5
COL18A1P39060 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
COL18A1P39060 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC24.44■■□□□ 1.5
COL18A1P39060 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 SART3-203ENST00000546611 1184 ntBASIC24.44■■□□□ 1.5
COL18A1P39060 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
COL18A1P39060 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
COL18A1P39060 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC24.44■■□□□ 1.5
COL18A1P39060 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 MED16-201ENST00000269814 1199 ntTSL 5 BASIC24.44■■□□□ 1.5
COL18A1P39060 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL18A1P39060 CSF3-203ENST00000394148 622 ntTSL 3 BASIC24.44■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms