Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRCH3Q96II8 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRCH3Q96II8 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRCH3Q96II8 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRCH3Q96II8 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRCH3Q96II8 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.11■□□□□ 0.81
LRCH3Q96II8 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 RNA5SP415-201ENST00000517246 115 ntBASIC20.11■□□□□ 0.81
LRCH3Q96II8 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 SPCS2P1-201ENST00000561636 679 ntBASIC20.11■□□□□ 0.81
LRCH3Q96II8 AC002347.1-201ENST00000569543 541 ntBASIC20.11■□□□□ 0.81
LRCH3Q96II8 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LRCH3Q96II8 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LRCH3Q96II8 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LRCH3Q96II8 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRCH3Q96II8 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LRCH3Q96II8 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
LRCH3Q96II8 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LRCH3Q96II8 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.1■□□□□ 0.81
LRCH3Q96II8 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
LRCH3Q96II8 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.1■□□□□ 0.81
LRCH3Q96II8 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
LRCH3Q96II8 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRCH3Q96II8 AC096582.2-201ENST00000510860 516 ntBASIC20.1■□□□□ 0.81
LRCH3Q96II8 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.1■□□□□ 0.81
LRCH3Q96II8 SNHG9-202ENST00000564014 471 ntBASIC20.1■□□□□ 0.81
LRCH3Q96II8 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.1■□□□□ 0.81
LRCH3Q96II8 PRR29-209ENST00000582540 967 ntTSL 2 BASIC20.1■□□□□ 0.81
LRCH3Q96II8 AP001269.4-201ENST00000609611 512 ntBASIC20.1■□□□□ 0.81
LRCH3Q96II8 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
LRCH3Q96II8 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LRCH3Q96II8 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.1■□□□□ 0.81
LRCH3Q96II8 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LRCH3Q96II8 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRCH3Q96II8 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LRCH3Q96II8 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
LRCH3Q96II8 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LRCH3Q96II8 AC073314.1-201ENST00000568729 2216 ntBASIC20.1■□□□□ 0.81
LRCH3Q96II8 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LRCH3Q96II8 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
LRCH3Q96II8 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC20.09■□□□□ 0.81
LRCH3Q96II8 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 PLK5-205ENST00000642079 1969 ntBASIC20.09■□□□□ 0.81
LRCH3Q96II8 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 IGHGP-201ENST00000390555 1178 ntBASIC20.09■□□□□ 0.81
LRCH3Q96II8 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.09■□□□□ 0.81
LRCH3Q96II8 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC20.09■□□□□ 0.81
LRCH3Q96II8 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.09■□□□□ 0.81
LRCH3Q96II8 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC20.09■□□□□ 0.81
LRCH3Q96II8 MTDHP3-201ENST00000594186 672 ntBASIC20.09■□□□□ 0.81
LRCH3Q96II8 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC20.09■□□□□ 0.81
LRCH3Q96II8 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
LRCH3Q96II8 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.09■□□□□ 0.81
LRCH3Q96II8 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 PCDHAC2-203ENST00000615316 3011 ntBASIC20.09■□□□□ 0.81
LRCH3Q96II8 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
LRCH3Q96II8 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRCH3Q96II8 TREX1-205ENST00000625293 1783 ntBASIC20.08■□□□□ 0.81
LRCH3Q96II8 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRCH3Q96II8 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.08■□□□□ 0.81
LRCH3Q96II8 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LRCH3Q96II8 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LRCH3Q96II8 FP700111.2-201ENST00000619190 1892 ntBASIC20.08■□□□□ 0.81
LRCH3Q96II8 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.08■□□□□ 0.81
LRCH3Q96II8 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRCH3Q96II8 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRCH3Q96II8 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.81
LRCH3Q96II8 AC007967.2-201ENST00000432613 625 ntBASIC20.08■□□□□ 0.81
LRCH3Q96II8 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.08■□□□□ 0.81
LRCH3Q96II8 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.08■□□□□ 0.81
LRCH3Q96II8 RNA5SP416-201ENST00000516838 111 ntBASIC20.08■□□□□ 0.81
LRCH3Q96II8 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LRCH3Q96II8 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.08■□□□□ 0.81
LRCH3Q96II8 PAM16-208ENST00000573553 722 ntTSL 2 BASIC20.08■□□□□ 0.81
LRCH3Q96II8 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC20.08■□□□□ 0.81
LRCH3Q96II8 AC011840.4-201ENST00000578471 627 ntBASIC20.08■□□□□ 0.81
LRCH3Q96II8 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.08■□□□□ 0.81
LRCH3Q96II8 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.08■□□□□ 0.81
LRCH3Q96II8 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.08■□□□□ 0.81
LRCH3Q96II8 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms