Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 AC025062.2-201ENST00000605477 670 ntBASIC19.69■□□□□ 0.74
CHD9Q3L8U1 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.69■□□□□ 0.74
CHD9Q3L8U1 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 RNA5SP415-201ENST00000517246 115 ntBASIC19.69■□□□□ 0.74
CHD9Q3L8U1 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.69■□□□□ 0.74
CHD9Q3L8U1 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 KRT89P-201ENST00000620027 1478 ntBASIC19.68■□□□□ 0.74
CHD9Q3L8U1 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHD9Q3L8U1 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 DNAJB3-201ENST00000446806 729 ntBASIC19.67■□□□□ 0.74
CHD9Q3L8U1 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHD9Q3L8U1 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 PCDHAC2-203ENST00000615316 3011 ntBASIC19.66■□□□□ 0.74
CHD9Q3L8U1 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 RPS2P28-201ENST00000314255 741 ntBASIC19.66■□□□□ 0.74
CHD9Q3L8U1 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.66■□□□□ 0.74
CHD9Q3L8U1 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 AC211486.1-202ENST00000416371 468 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 METTL21AP1-201ENST00000438852 635 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 AC211476.1-201ENST00000503899 468 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 AC083906.6-201ENST00000641366 219 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 AC079781.4-201ENST00000641908 219 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CHD9Q3L8U1 TP73-AS1-210ENST00000637775 1455 ntBASIC19.65■□□□□ 0.74
CHD9Q3L8U1 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms