Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 NUS1P1-201ENST00000446295 882 ntBASIC19.19■□□□□ 0.66
TDP1Q9NUW8 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 AC009065.1-201ENST00000564055 1225 ntBASIC19.19■□□□□ 0.66
TDP1Q9NUW8 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 TPSP2-201ENST00000561760 610 ntBASIC19.18■□□□□ 0.66
TDP1Q9NUW8 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 AC090616.6-201ENST00000582640 721 ntBASIC19.18■□□□□ 0.66
TDP1Q9NUW8 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TDP1Q9NUW8 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 AL390719.2-201ENST00000606993 987 ntBASIC19.17■□□□□ 0.66
TDP1Q9NUW8 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TDP1Q9NUW8 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 LINC00265-3P-201ENST00000447588 903 ntBASIC19.16■□□□□ 0.66
TDP1Q9NUW8 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 AC111152.3-201ENST00000569699 673 ntBASIC19.16■□□□□ 0.66
TDP1Q9NUW8 RN7SL510P-201ENST00000581311 263 ntBASIC19.16■□□□□ 0.66
TDP1Q9NUW8 GPR32P1-201ENST00000601788 811 ntBASIC19.16■□□□□ 0.66
TDP1Q9NUW8 AC024563.2-201ENST00000603282 481 ntBASIC19.16■□□□□ 0.66
TDP1Q9NUW8 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TDP1Q9NUW8 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TDP1Q9NUW8 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.15■□□□□ 0.66
TDP1Q9NUW8 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.15■□□□□ 0.66
TDP1Q9NUW8 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TDP1Q9NUW8 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms