Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.36■□□□□ 0.21
LIME1Q9H400 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.36■□□□□ 0.21
LIME1Q9H400 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.36■□□□□ 0.21
LIME1Q9H400 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LIME1Q9H400 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.35■□□□□ 0.21
LIME1Q9H400 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
LIME1Q9H400 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC16.35■□□□□ 0.21
LIME1Q9H400 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.35■□□□□ 0.21
LIME1Q9H400 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LIME1Q9H400 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.35■□□□□ 0.21
LIME1Q9H400 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.35■□□□□ 0.21
LIME1Q9H400 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
LIME1Q9H400 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
LIME1Q9H400 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 AC092597.1-201ENST00000487352 616 ntBASIC16.35■□□□□ 0.21
LIME1Q9H400 NEK4P2-201ENST00000580004 1012 ntBASIC16.35■□□□□ 0.21
LIME1Q9H400 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LIME1Q9H400 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
LIME1Q9H400 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 AL138781.2-201ENST00000617896 1843 ntBASIC16.35■□□□□ 0.21
LIME1Q9H400 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.35■□□□□ 0.21
LIME1Q9H400 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.35■□□□□ 0.21
LIME1Q9H400 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LIME1Q9H400 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.34■□□□□ 0.21
LIME1Q9H400 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
LIME1Q9H400 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
LIME1Q9H400 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.34■□□□□ 0.21
LIME1Q9H400 HBZP1-201ENST00000354915 429 ntBASIC16.34■□□□□ 0.21
LIME1Q9H400 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.34■□□□□ 0.21
LIME1Q9H400 NME1-207ENST00000480143 964 ntTSL 2 BASIC16.34■□□□□ 0.21
LIME1Q9H400 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.34■□□□□ 0.21
LIME1Q9H400 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.34■□□□□ 0.21
LIME1Q9H400 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.34■□□□□ 0.21
LIME1Q9H400 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.34■□□□□ 0.21
LIME1Q9H400 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.34■□□□□ 0.21
LIME1Q9H400 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
LIME1Q9H400 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.34■□□□□ 0.21
LIME1Q9H400 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.34■□□□□ 0.21
LIME1Q9H400 KRT8P11-201ENST00000409686 1436 ntBASIC16.34■□□□□ 0.21
LIME1Q9H400 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
LIME1Q9H400 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIME1Q9H400 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIME1Q9H400 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIME1Q9H400 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.33■□□□□ 0.21
LIME1Q9H400 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.33■□□□□ 0.21
LIME1Q9H400 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LIME1Q9H400 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIME1Q9H400 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 AL645929.1-201ENST00000420084 975 ntBASIC16.33■□□□□ 0.2
LIME1Q9H400 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.33■□□□□ 0.2
LIME1Q9H400 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.33■□□□□ 0.2
LIME1Q9H400 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.33■□□□□ 0.2
LIME1Q9H400 MIR4674-201ENST00000582457 87 ntBASIC16.33■□□□□ 0.2
LIME1Q9H400 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.33■□□□□ 0.2
LIME1Q9H400 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.33■□□□□ 0.2
LIME1Q9H400 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIME1Q9H400 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
LIME1Q9H400 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LIME1Q9H400 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms