Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
VPS13DQ5THJ4 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
VPS13DQ5THJ4 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
VPS13DQ5THJ4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC12.52□□□□□ -0.4
VPS13DQ5THJ4 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
VPS13DQ5THJ4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
VPS13DQ5THJ4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
VPS13DQ5THJ4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
VPS13DQ5THJ4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC12.52□□□□□ -0.4
VPS13DQ5THJ4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
VPS13DQ5THJ4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
VPS13DQ5THJ4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 AL353692.3-201ENST00000407031 1396 ntBASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 AC099343.3-201ENST00000605834 2503 ntBASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 IGHV3-22-201ENST00000520721 359 ntBASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 AC034105.1-201ENST00000563488 319 ntBASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 AC027796.2-201ENST00000575326 344 ntBASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 AL138831.2-201ENST00000606564 490 ntBASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13DQ5THJ4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 BX842568.4-201ENST00000421222 227 ntBASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 AC139887.3-201ENST00000568585 713 ntBASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 AC008608.2-201ENST00000606089 416 ntBASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 INTS4P1-201ENST00000438455 1935 ntBASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 Z98044.1-201ENST00000632503 1764 ntBASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 AC116407.3-201ENST00000623905 1129 ntBASIC12.51□□□□□ -0.41
VPS13DQ5THJ4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
VPS13DQ5THJ4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC12.5□□□□□ -0.41
VPS13DQ5THJ4 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
VPS13DQ5THJ4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
VPS13DQ5THJ4 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
VPS13DQ5THJ4 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
VPS13DQ5THJ4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
VPS13DQ5THJ4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC12.5□□□□□ -0.41
VPS13DQ5THJ4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC12.5□□□□□ -0.41
VPS13DQ5THJ4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC12.5□□□□□ -0.41
VPS13DQ5THJ4 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC12.5□□□□□ -0.41
VPS13DQ5THJ4 RPSAP43-201ENST00000402237 625 ntBASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms