Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CTCFP49711 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.56■■□□□ 1.04
CTCFP49711 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CTCFP49711 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.56■■□□□ 1.04
CTCFP49711 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTCFP49711 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CTCFP49711 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTCFP49711 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTCFP49711 IGHGP-201ENST00000390555 1178 ntBASIC21.56■■□□□ 1.04
CTCFP49711 AC023274.1-201ENST00000418278 595 ntBASIC21.56■■□□□ 1.04
CTCFP49711 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CTCFP49711 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21.56■■□□□ 1.04
CTCFP49711 AC096582.2-201ENST00000510860 516 ntBASIC21.56■■□□□ 1.04
CTCFP49711 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC21.56■■□□□ 1.04
CTCFP49711 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC21.56■■□□□ 1.04
CTCFP49711 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.56■■□□□ 1.04
CTCFP49711 AL096865.1-201ENST00000606796 927 ntBASIC21.56■■□□□ 1.04
CTCFP49711 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC21.56■■□□□ 1.04
CTCFP49711 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTCFP49711 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTCFP49711 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CTCFP49711 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC21.56■■□□□ 1.04
CTCFP49711 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
CTCFP49711 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.56■■□□□ 1.04
CTCFP49711 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CTCFP49711 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.56■■□□□ 1.04
CTCFP49711 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CTCFP49711 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC21.55■■□□□ 1.04
CTCFP49711 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.55■■□□□ 1.04
CTCFP49711 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTCFP49711 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTCFP49711 AC254562.1-201ENST00000417586 456 ntBASIC21.55■■□□□ 1.04
CTCFP49711 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTCFP49711 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC21.55■■□□□ 1.04
CTCFP49711 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.55■■□□□ 1.04
CTCFP49711 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTCFP49711 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTCFP49711 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.55■■□□□ 1.04
CTCFP49711 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTCFP49711 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTCFP49711 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CTCFP49711 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CTCFP49711 AL391422.3-201ENST00000603791 2761 ntBASIC21.54■■□□□ 1.04
CTCFP49711 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.54■■□□□ 1.04
CTCFP49711 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.54■■□□□ 1.04
CTCFP49711 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CTCFP49711 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC21.54■■□□□ 1.04
CTCFP49711 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.54■■□□□ 1.04
CTCFP49711 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC21.54■■□□□ 1.04
CTCFP49711 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
CTCFP49711 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC21.54■■□□□ 1.04
CTCFP49711 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC21.54■■□□□ 1.04
CTCFP49711 MCCD1P1-208ENST00000445732 328 ntBASIC21.54■■□□□ 1.04
CTCFP49711 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC21.54■■□□□ 1.04
CTCFP49711 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC21.54■■□□□ 1.04
CTCFP49711 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.54■■□□□ 1.04
CTCFP49711 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC21.54■■□□□ 1.04
CTCFP49711 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC21.54■■□□□ 1.04
CTCFP49711 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.54■■□□□ 1.04
CTCFP49711 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CTCFP49711 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CTCFP49711 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTCFP49711 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.53■■□□□ 1.04
CTCFP49711 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTCFP49711 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CTCFP49711 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTCFP49711 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.53■■□□□ 1.04
CTCFP49711 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTCFP49711 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CTCFP49711 BCRP1-201ENST00000444246 691 ntBASIC21.53■■□□□ 1.04
CTCFP49711 TAF8-206ENST00000472818 719 ntTSL 2 BASIC21.53■■□□□ 1.04
CTCFP49711 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.53■■□□□ 1.04
CTCFP49711 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC21.53■■□□□ 1.04
CTCFP49711 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC21.53■■□□□ 1.04
CTCFP49711 AC005829.1-201ENST00000570002 483 ntBASIC21.53■■□□□ 1.04
CTCFP49711 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.53■■□□□ 1.04
CTCFP49711 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTCFP49711 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTCFP49711 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CTCFP49711 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTCFP49711 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CTCFP49711 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CTCFP49711 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CTCFP49711 LINC01521-201ENST00000504184 1943 ntBASIC21.53■■□□□ 1.04
CTCFP49711 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CTCFP49711 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms