Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
CUX1P39880 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
CUX1P39880 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
CUX1P39880 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC31.18■■■□□ 2.58
CUX1P39880 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC31.18■■■□□ 2.58
CUX1P39880 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC31.18■■■□□ 2.58
CUX1P39880 AC139887.3-201ENST00000568585 713 ntBASIC31.18■■■□□ 2.58
CUX1P39880 MIR5100-201ENST00000579544 119 ntBASIC31.18■■■□□ 2.58
CUX1P39880 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC31.18■■■□□ 2.58
CUX1P39880 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CUX1P39880 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CUX1P39880 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
CUX1P39880 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CUX1P39880 DDT-203ENST00000403754 569 ntTSL 3 BASIC31.17■■■□□ 2.58
CUX1P39880 DDT-206ENST00000430101 573 ntTSL 2 BASIC31.17■■■□□ 2.58
CUX1P39880 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC31.17■■■□□ 2.58
CUX1P39880 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC31.17■■■□□ 2.58
CUX1P39880 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC31.17■■■□□ 2.58
CUX1P39880 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
CUX1P39880 AC113404.2-201ENST00000507884 177 ntBASIC31.17■■■□□ 2.58
CUX1P39880 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CUX1P39880 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC31.17■■■□□ 2.58
CUX1P39880 PGAM5P1-201ENST00000518923 814 ntBASIC31.17■■■□□ 2.58
CUX1P39880 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC31.17■■■□□ 2.58
CUX1P39880 AL591684.3-201ENST00000605187 298 ntBASIC31.17■■■□□ 2.58
CUX1P39880 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
CUX1P39880 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CUX1P39880 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CUX1P39880 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC31.16■■■□□ 2.58
CUX1P39880 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CUX1P39880 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CUX1P39880 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC31.16■■■□□ 2.58
CUX1P39880 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC31.16■■■□□ 2.58
CUX1P39880 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
CUX1P39880 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC31.16■■■□□ 2.58
CUX1P39880 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CUX1P39880 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC31.16■■■□□ 2.58
CUX1P39880 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC31.16■■■□□ 2.58
CUX1P39880 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CUX1P39880 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC31.15■■■□□ 2.58
CUX1P39880 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CUX1P39880 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CUX1P39880 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CUX1P39880 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CUX1P39880 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CUX1P39880 MIR1233-2-201ENST00000408138 82 ntBASIC31.15■■■□□ 2.58
CUX1P39880 MIR1233-1-201ENST00000408722 82 ntBASIC31.15■■■□□ 2.58
CUX1P39880 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC31.15■■■□□ 2.58
CUX1P39880 AC092183.1-201ENST00000469884 875 ntBASIC31.15■■■□□ 2.58
CUX1P39880 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC31.15■■■□□ 2.58
CUX1P39880 FAM215A-202ENST00000632077 792 ntBASIC31.15■■■□□ 2.58
CUX1P39880 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CUX1P39880 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
CUX1P39880 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CUX1P39880 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CUX1P39880 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
CUX1P39880 AC073648.2-201ENST00000510116 352 ntBASIC31.14■■■□□ 2.58
CUX1P39880 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC31.14■■■□□ 2.58
CUX1P39880 AC092865.5-201ENST00000545435 363 ntBASIC31.14■■■□□ 2.58
CUX1P39880 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC31.14■■■□□ 2.58
CUX1P39880 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC31.14■■■□□ 2.58
CUX1P39880 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC31.14■■■□□ 2.58
CUX1P39880 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
CUX1P39880 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC31.14■■■□□ 2.58
CUX1P39880 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC31.14■■■□□ 2.58
CUX1P39880 NARF-204ENST00000390006 1766 ntTSL 2 BASIC31.14■■■□□ 2.58
CUX1P39880 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
CUX1P39880 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
CUX1P39880 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
CUX1P39880 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
CUX1P39880 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC31.14■■■□□ 2.58
CUX1P39880 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
CUX1P39880 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC31.14■■■□□ 2.57
CUX1P39880 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
CUX1P39880 BX842568.4-201ENST00000421222 227 ntBASIC31.14■■■□□ 2.57
CUX1P39880 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC31.14■■■□□ 2.57
CUX1P39880 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC31.14■■■□□ 2.57
CUX1P39880 COX10-202ENST00000429152 875 ntTSL 2 BASIC31.14■■■□□ 2.57
CUX1P39880 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC31.14■■■□□ 2.57
CUX1P39880 AC145285.3-201ENST00000564603 959 ntBASIC31.14■■■□□ 2.57
CUX1P39880 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CUX1P39880 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CUX1P39880 NFYC-AS1-201ENST00000606277 1687 ntBASIC31.13■■■□□ 2.57
CUX1P39880 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CUX1P39880 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CUX1P39880 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CUX1P39880 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CUX1P39880 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC31.13■■■□□ 2.57
CUX1P39880 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CUX1P39880 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
CUX1P39880 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CUX1P39880 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
CUX1P39880 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CUX1P39880 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CUX1P39880 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
CUX1P39880 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC31.12■■■□□ 2.57
CUX1P39880 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC31.12■■■□□ 2.57
CUX1P39880 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CUX1P39880 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CUX1P39880 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms