Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.33■□□□□ 0.68
HMGA1P17096 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGA1P17096 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGA1P17096 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.33■□□□□ 0.68
HMGA1P17096 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.33■□□□□ 0.68
HMGA1P17096 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.33■□□□□ 0.68
HMGA1P17096 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.33■□□□□ 0.68
HMGA1P17096 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.33■□□□□ 0.68
HMGA1P17096 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.33■□□□□ 0.68
HMGA1P17096 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGA1P17096 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGA1P17096 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGA1P17096 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGA1P17096 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGA1P17096 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.33■□□□□ 0.68
HMGA1P17096 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.33■□□□□ 0.68
HMGA1P17096 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.33■□□□□ 0.68
HMGA1P17096 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGA1P17096 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGA1P17096 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.33■□□□□ 0.68
HMGA1P17096 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGA1P17096 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGA1P17096 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HMGA1P17096 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HMGA1P17096 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGA1P17096 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGA1P17096 AL163051.1-201ENST00000569214 1512 ntBASIC19.32■□□□□ 0.68
HMGA1P17096 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HMGA1P17096 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
HMGA1P17096 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 AP000593.1-201ENST00000393668 712 ntBASIC19.32■□□□□ 0.68
HMGA1P17096 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGA1P17096 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.32■□□□□ 0.68
HMGA1P17096 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HMGA1P17096 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGA1P17096 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGA1P17096 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGA1P17096 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGA1P17096 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGA1P17096 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
HMGA1P17096 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGA1P17096 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGA1P17096 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGA1P17096 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGA1P17096 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGA1P17096 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGA1P17096 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGA1P17096 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGA1P17096 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGA1P17096 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.31■□□□□ 0.68
HMGA1P17096 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGA1P17096 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGA1P17096 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGA1P17096 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.31■□□□□ 0.68
HMGA1P17096 TPSP2-201ENST00000561760 610 ntBASIC19.31■□□□□ 0.68
HMGA1P17096 AC009065.1-201ENST00000564055 1225 ntBASIC19.31■□□□□ 0.68
HMGA1P17096 MIR3652-201ENST00000579335 131 ntBASIC19.31■□□□□ 0.68
HMGA1P17096 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
HMGA1P17096 AC024563.2-201ENST00000603282 481 ntBASIC19.31■□□□□ 0.68
HMGA1P17096 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
HMGA1P17096 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGA1P17096 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGA1P17096 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGA1P17096 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGA1P17096 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGA1P17096 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGA1P17096 KRT18P1-202ENST00000452408 1331 ntBASIC19.3■□□□□ 0.68
HMGA1P17096 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGA1P17096 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGA1P17096 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGA1P17096 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGA1P17096 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGA1P17096 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
HMGA1P17096 IGHGP-201ENST00000390555 1178 ntBASIC19.3■□□□□ 0.68
HMGA1P17096 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGA1P17096 DRAXINP1-201ENST00000437611 948 ntBASIC19.3■□□□□ 0.68
HMGA1P17096 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGA1P17096 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
HMGA1P17096 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGA1P17096 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGA1P17096 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.3■□□□□ 0.68
HMGA1P17096 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.3■□□□□ 0.68
HMGA1P17096 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HMGA1P17096 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGA1P17096 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGA1P17096 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGA1P17096 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
HMGA1P17096 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms