Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC163A0A0D9SF12 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC163A0A0D9SF12 PMS2P7-201ENST00000506558 1336 ntBASIC18.43■□□□□ 0.54
CCDC163A0A0D9SF12 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC163A0A0D9SF12 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC163A0A0D9SF12 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC163A0A0D9SF12 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC163A0A0D9SF12 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.43■□□□□ 0.54
CCDC163A0A0D9SF12 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC163A0A0D9SF12 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC163A0A0D9SF12 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 MIR1233-2-201ENST00000408138 82 ntBASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 MIR1233-1-201ENST00000408722 82 ntBASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC163A0A0D9SF12 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 FAM220CP-201ENST00000395253 831 ntBASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 AC008608.2-201ENST00000606089 416 ntBASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.41■□□□□ 0.54
CCDC163A0A0D9SF12 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 AC092865.5-201ENST00000545435 363 ntBASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 AC139887.3-201ENST00000568585 713 ntBASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 AC008687.5-201ENST00000593746 558 ntBASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CCDC163A0A0D9SF12 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.39■□□□□ 0.54
CCDC163A0A0D9SF12 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC163A0A0D9SF12 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 RPS2P28-201ENST00000314255 741 ntBASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 RBM17P3-201ENST00000417687 1192 ntBASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 SCARNA2-201ENST00000458748 420 ntBASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 AC092183.1-201ENST00000469884 875 ntBASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC163A0A0D9SF12 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms