Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 DDT-203ENST00000403754 569 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 AC104390.1-201ENST00000555663 520 ntBASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 AL049840.3-201ENST00000602669 611 ntBASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 KRT8P50-201ENST00000562022 1438 ntBASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 RNPS1P1-201ENST00000507437 918 ntBASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 GPR32P1-201ENST00000601788 811 ntBASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13DQ5THJ4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 HNRNPDP1-201ENST00000439535 754 ntBASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 AL355877.3-201ENST00000622820 899 ntBASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 FAM197Y8-203ENST00000450145 560 ntBASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 AC005336.2-201ENST00000593183 939 ntBASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
VPS13DQ5THJ4 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 AC132008.2-207ENST00000454517 770 ntBASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 AC064862.7-201ENST00000604520 867 ntBASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 POLD2P1-201ENST00000511220 997 ntBASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 AP001005.1-201ENST00000571755 1248 ntBASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 AP001269.4-201ENST00000609611 512 ntBASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC12.53□□□□□ -0.4
VPS13DQ5THJ4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms