Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC23.53■■□□□ 1.36
COL5A3P25940 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC23.53■■□□□ 1.36
COL5A3P25940 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL5A3P25940 RPL18-209ENST00000550645 463 ntTSL 5 BASIC23.53■■□□□ 1.36
COL5A3P25940 RPL18-214ENST00000552588 559 ntTSL 3 BASIC23.53■■□□□ 1.36
COL5A3P25940 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC23.53■■□□□ 1.36
COL5A3P25940 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC23.53■■□□□ 1.36
COL5A3P25940 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL5A3P25940 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC23.53■■□□□ 1.36
COL5A3P25940 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL5A3P25940 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL5A3P25940 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL5A3P25940 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
COL5A3P25940 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC23.53■■□□□ 1.36
COL5A3P25940 MINOS1P3-201ENST00000457048 203 ntBASIC23.53■■□□□ 1.36
COL5A3P25940 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC23.53■■□□□ 1.36
COL5A3P25940 AC114341.1-201ENST00000618070 349 ntBASIC23.53■■□□□ 1.36
COL5A3P25940 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL5A3P25940 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC23.52■■□□□ 1.36
COL5A3P25940 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL5A3P25940 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL5A3P25940 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL5A3P25940 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL5A3P25940 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC23.52■■□□□ 1.36
COL5A3P25940 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC23.52■■□□□ 1.36
COL5A3P25940 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC23.52■■□□□ 1.36
COL5A3P25940 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL5A3P25940 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC23.52■■□□□ 1.36
COL5A3P25940 PAM16-208ENST00000573553 722 ntTSL 2 BASIC23.52■■□□□ 1.36
COL5A3P25940 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC23.52■■□□□ 1.36
COL5A3P25940 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL5A3P25940 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC23.52■■□□□ 1.36
COL5A3P25940 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
COL5A3P25940 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC23.52■■□□□ 1.36
COL5A3P25940 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.35
COL5A3P25940 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC23.51■■□□□ 1.35
COL5A3P25940 RPP21-221ENST00000428040 594 ntTSL 2 BASIC23.51■■□□□ 1.35
COL5A3P25940 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC23.51■■□□□ 1.35
COL5A3P25940 AC145285.3-201ENST00000564603 959 ntBASIC23.51■■□□□ 1.35
COL5A3P25940 AC117500.6-201ENST00000624871 588 ntBASIC23.51■■□□□ 1.35
COL5A3P25940 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
COL5A3P25940 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL5A3P25940 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL5A3P25940 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL5A3P25940 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL5A3P25940 DDT-203ENST00000403754 569 ntTSL 3 BASIC23.5■■□□□ 1.35
COL5A3P25940 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL5A3P25940 DDT-206ENST00000430101 573 ntTSL 2 BASIC23.5■■□□□ 1.35
COL5A3P25940 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL5A3P25940 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL5A3P25940 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC23.5■■□□□ 1.35
COL5A3P25940 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC23.5■■□□□ 1.35
COL5A3P25940 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC23.5■■□□□ 1.35
COL5A3P25940 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL5A3P25940 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
COL5A3P25940 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL5A3P25940 NFYC-AS1-201ENST00000606277 1687 ntBASIC23.5■■□□□ 1.35
COL5A3P25940 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL5A3P25940 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC23.5■■□□□ 1.35
COL5A3P25940 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL5A3P25940 FGFR3P6-201ENST00000457012 610 ntBASIC23.5■■□□□ 1.35
COL5A3P25940 MOK-208ENST00000519058 917 ntTSL 2 BASIC23.5■■□□□ 1.35
COL5A3P25940 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC23.5■■□□□ 1.35
COL5A3P25940 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC23.5■■□□□ 1.35
COL5A3P25940 AC011840.4-201ENST00000578471 627 ntBASIC23.5■■□□□ 1.35
COL5A3P25940 AL049840.3-201ENST00000602669 611 ntBASIC23.5■■□□□ 1.35
COL5A3P25940 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL5A3P25940 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL5A3P25940 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC23.49■■□□□ 1.35
COL5A3P25940 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL5A3P25940 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC23.49■■□□□ 1.35
COL5A3P25940 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC23.49■■□□□ 1.35
COL5A3P25940 AF186996.4-201ENST00000467186 377 ntBASIC23.49■■□□□ 1.35
COL5A3P25940 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC23.49■■□□□ 1.35
COL5A3P25940 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC23.49■■□□□ 1.35
COL5A3P25940 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC23.49■■□□□ 1.35
COL5A3P25940 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL5A3P25940 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL5A3P25940 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL5A3P25940 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL5A3P25940 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL5A3P25940 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
COL5A3P25940 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC23.48■■□□□ 1.35
COL5A3P25940 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC23.48■■□□□ 1.35
COL5A3P25940 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC23.48■■□□□ 1.35
COL5A3P25940 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC23.48■■□□□ 1.35
COL5A3P25940 AC106730.1-201ENST00000566722 1090 ntBASIC23.48■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms