Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.02■□□□□ 0.64
HOXC11O43248 RNF126P1-202ENST00000569893 925 ntBASIC19.02■□□□□ 0.64
HOXC11O43248 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
HOXC11O43248 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.02■□□□□ 0.64
HOXC11O43248 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HOXC11O43248 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.02■□□□□ 0.64
HOXC11O43248 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HOXC11O43248 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.02■□□□□ 0.64
HOXC11O43248 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.02■□□□□ 0.63
HOXC11O43248 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
HOXC11O43248 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.02■□□□□ 0.63
HOXC11O43248 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
HOXC11O43248 HEIH-201ENST00000623091 1652 ntBASIC19.01■□□□□ 0.63
HOXC11O43248 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 AL020996.1-203ENST00000536896 2307 ntBASIC19.01■□□□□ 0.63
HOXC11O43248 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.01■□□□□ 0.63
HOXC11O43248 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXC11O43248 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXC11O43248 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
HOXC11O43248 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.01■□□□□ 0.63
HOXC11O43248 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.01■□□□□ 0.63
HOXC11O43248 TSPY22P-201ENST00000427496 604 ntBASIC19.01■□□□□ 0.63
HOXC11O43248 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
HOXC11O43248 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXC11O43248 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
HOXC11O43248 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
HOXC11O43248 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
HOXC11O43248 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.01■□□□□ 0.63
HOXC11O43248 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 Z98044.1-201ENST00000632503 1764 ntBASIC19.01■□□□□ 0.63
HOXC11O43248 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXC11O43248 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXC11O43248 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXC11O43248 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
HOXC11O43248 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 AFG3L1P-217ENST00000557444 2447 ntBASIC19■□□□□ 0.63
HOXC11O43248 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19■□□□□ 0.63
HOXC11O43248 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19■□□□□ 0.63
HOXC11O43248 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19■□□□□ 0.63
HOXC11O43248 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19■□□□□ 0.63
HOXC11O43248 MIR3652-201ENST00000579335 131 ntBASIC19■□□□□ 0.63
HOXC11O43248 AP002414.4-201ENST00000589764 1148 ntBASIC19■□□□□ 0.63
HOXC11O43248 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19■□□□□ 0.63
HOXC11O43248 AL121894.2-201ENST00000602977 491 ntBASIC19■□□□□ 0.63
HOXC11O43248 AC012313.10-201ENST00000623509 926 ntBASIC19■□□□□ 0.63
HOXC11O43248 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
HOXC11O43248 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19■□□□□ 0.63
HOXC11O43248 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19■□□□□ 0.63
HOXC11O43248 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXC11O43248 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19■□□□□ 0.63
HOXC11O43248 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.99■□□□□ 0.63
HOXC11O43248 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.99■□□□□ 0.63
HOXC11O43248 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 AC009065.1-201ENST00000564055 1225 ntBASIC18.99■□□□□ 0.63
HOXC11O43248 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.99■□□□□ 0.63
HOXC11O43248 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
HOXC11O43248 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
HOXC11O43248 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC11O43248 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.98■□□□□ 0.63
HOXC11O43248 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.98■□□□□ 0.63
HOXC11O43248 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
HOXC11O43248 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.98■□□□□ 0.63
HOXC11O43248 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms