Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 SLC25A1P1-201ENST00000528351 927 ntBASIC32.42■■■□□ 2.78
CCDC88BA6NC98 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC88BA6NC98 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC32.41■■■□□ 2.78
CCDC88BA6NC98 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC88BA6NC98 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC88BA6NC98 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC32.41■■■□□ 2.78
CCDC88BA6NC98 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC88BA6NC98 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC32.41■■■□□ 2.78
CCDC88BA6NC98 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC32.41■■■□□ 2.78
CCDC88BA6NC98 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC32.41■■■□□ 2.78
CCDC88BA6NC98 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC88BA6NC98 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC32.4■■■□□ 2.78
CCDC88BA6NC98 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 KRT18P41-201ENST00000518924 1277 ntBASIC32.39■■■□□ 2.78
CCDC88BA6NC98 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC32.39■■■□□ 2.78
CCDC88BA6NC98 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC32.39■■■□□ 2.77
CCDC88BA6NC98 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC32.38■■■□□ 2.77
CCDC88BA6NC98 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC32.38■■■□□ 2.77
CCDC88BA6NC98 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC32.38■■■□□ 2.77
CCDC88BA6NC98 IL9RP2-201ENST00000423948 1312 ntBASIC32.38■■■□□ 2.77
CCDC88BA6NC98 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
CCDC88BA6NC98 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC32.38■■■□□ 2.77
CCDC88BA6NC98 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC32.38■■■□□ 2.77
CCDC88BA6NC98 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
CCDC88BA6NC98 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
CCDC88BA6NC98 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC32.38■■■□□ 2.77
CCDC88BA6NC98 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC32.37■■■□□ 2.77
CCDC88BA6NC98 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
CCDC88BA6NC98 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC32.37■■■□□ 2.77
CCDC88BA6NC98 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC32.37■■■□□ 2.77
CCDC88BA6NC98 MIR7706-201ENST00000613747 67 ntBASIC32.37■■■□□ 2.77
CCDC88BA6NC98 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC32.37■■■□□ 2.77
CCDC88BA6NC98 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC32.37■■■□□ 2.77
CCDC88BA6NC98 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
CCDC88BA6NC98 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC32.37■■■□□ 2.77
CCDC88BA6NC98 LINC01521-201ENST00000504184 1943 ntBASIC32.37■■■□□ 2.77
CCDC88BA6NC98 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 AC005336.2-201ENST00000593183 939 ntBASIC32.36■■■□□ 2.77
CCDC88BA6NC98 AC148477.8-201ENST00000624298 468 ntBASIC32.36■■■□□ 2.77
CCDC88BA6NC98 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 CLDN5-201ENST00000403084 2357 ntBASIC32.36■■■□□ 2.77
CCDC88BA6NC98 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 HEIH-201ENST00000623091 1652 ntBASIC32.36■■■□□ 2.77
CCDC88BA6NC98 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC32.36■■■□□ 2.77
CCDC88BA6NC98 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 AL590627.1-203ENST00000421194 1026 ntBASIC32.35■■■□□ 2.77
CCDC88BA6NC98 VENTXP7-201ENST00000475503 772 ntBASIC32.35■■■□□ 2.77
CCDC88BA6NC98 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms