Protein–RNA interactions for Protein: Q91XX6

Pcdhgb4, Protocadherin gamma B4, mousemouse

Predictions only

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb4Q91XX6 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Pcdhgb4Q91XX6 Gm8503-201ENSMUST00000118131 455 ntBASIC24.31■■□□□ 1.48
Pcdhgb4Q91XX6 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Pcdhgb4Q91XX6 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Pcdhgb4Q91XX6 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Pcdhgb4Q91XX6 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Pcdhgb4Q91XX6 Gm37136-201ENSMUST00000194368 194 ntBASIC24.29■■□□□ 1.48
Pcdhgb4Q91XX6 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
Pcdhgb4Q91XX6 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Pcdhgb4Q91XX6 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Pcdhgb4Q91XX6 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Pcdhgb4Q91XX6 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
Pcdhgb4Q91XX6 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
Pcdhgb4Q91XX6 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
Pcdhgb4Q91XX6 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Pcdhgb4Q91XX6 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC24.26■■□□□ 1.47
Pcdhgb4Q91XX6 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pcdhgb4Q91XX6 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC24.25■■□□□ 1.47
Pcdhgb4Q91XX6 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Pcdhgb4Q91XX6 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pcdhgb4Q91XX6 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Pcdhgb4Q91XX6 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pcdhgb4Q91XX6 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Pcdhgb4Q91XX6 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Pcdhgb4Q91XX6 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Pcdhgb4Q91XX6 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC24.23■■□□□ 1.47
Pcdhgb4Q91XX6 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
Pcdhgb4Q91XX6 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Pcdhgb4Q91XX6 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
Pcdhgb4Q91XX6 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Pcdhgb4Q91XX6 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
Pcdhgb4Q91XX6 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Pcdhgb4Q91XX6 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.47
Pcdhgb4Q91XX6 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Pcdhgb4Q91XX6 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Pcdhgb4Q91XX6 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
Pcdhgb4Q91XX6 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
Pcdhgb4Q91XX6 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Pcdhgb4Q91XX6 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdhgb4Q91XX6 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdhgb4Q91XX6 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdhgb4Q91XX6 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdhgb4Q91XX6 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdhgb4Q91XX6 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Pcdhgb4Q91XX6 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Pcdhgb4Q91XX6 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
Pcdhgb4Q91XX6 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Pcdhgb4Q91XX6 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Pcdhgb4Q91XX6 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pcdhgb4Q91XX6 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
Pcdhgb4Q91XX6 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
Pcdhgb4Q91XX6 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pcdhgb4Q91XX6 Il17rd-202ENSMUST00000223942 2186 ntBASIC24.16■■□□□ 1.46
Pcdhgb4Q91XX6 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Pcdhgb4Q91XX6 Gm4419-202ENSMUST00000226239 1431 ntBASIC24.15■■□□□ 1.46
Pcdhgb4Q91XX6 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Pcdhgb4Q91XX6 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Pcdhgb4Q91XX6 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC24.14■■□□□ 1.45
Pcdhgb4Q91XX6 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Pcdhgb4Q91XX6 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Pcdhgb4Q91XX6 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
Pcdhgb4Q91XX6 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Pcdhgb4Q91XX6 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
Pcdhgb4Q91XX6 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Pcdhgb4Q91XX6 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Pcdhgb4Q91XX6 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC24.12■■□□□ 1.45
Pcdhgb4Q91XX6 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Pcdhgb4Q91XX6 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
Pcdhgb4Q91XX6 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Pcdhgb4Q91XX6 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC24.12■■□□□ 1.45
Pcdhgb4Q91XX6 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Pcdhgb4Q91XX6 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Pcdhgb4Q91XX6 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Pcdhgb4Q91XX6 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Pcdhgb4Q91XX6 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Pcdhgb4Q91XX6 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Pcdhgb4Q91XX6 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Pcdhgb4Q91XX6 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC24.11■■□□□ 1.45
Pcdhgb4Q91XX6 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC24.11■■□□□ 1.45
Pcdhgb4Q91XX6 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Pcdhgb4Q91XX6 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC24.1■■□□□ 1.45
Pcdhgb4Q91XX6 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC24.1■■□□□ 1.45
Pcdhgb4Q91XX6 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Pcdhgb4Q91XX6 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC24.09■■□□□ 1.45
Pcdhgb4Q91XX6 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Pcdhgb4Q91XX6 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Pcdhgb4Q91XX6 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
Pcdhgb4Q91XX6 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
Pcdhgb4Q91XX6 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
Pcdhgb4Q91XX6 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
Pcdhgb4Q91XX6 AC131739.1-201ENSMUST00000221692 1245 ntBASIC24.07■■□□□ 1.44
Pcdhgb4Q91XX6 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Pcdhgb4Q91XX6 H3f3aos-201ENSMUST00000097448 2905 ntBASIC24.06■■□□□ 1.44
Pcdhgb4Q91XX6 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Pcdhgb4Q91XX6 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Pcdhgb4Q91XX6 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
Pcdhgb4Q91XX6 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Pcdhgb4Q91XX6 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Pcdhgb4Q91XX6 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Pcdhgb4Q91XX6 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms