Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
Clcn1Q64347 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
Clcn1Q64347 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC29.48■■■□□ 2.31
Clcn1Q64347 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC29.48■■■□□ 2.31
Clcn1Q64347 AC122317.2-201ENSMUST00000218708 1248 ntBASIC29.48■■■□□ 2.31
Clcn1Q64347 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC29.48■■■□□ 2.31
Clcn1Q64347 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC29.48■■■□□ 2.31
Clcn1Q64347 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
Clcn1Q64347 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC29.47■■■□□ 2.31
Clcn1Q64347 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Clcn1Q64347 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Clcn1Q64347 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
Clcn1Q64347 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC29.45■■■□□ 2.31
Clcn1Q64347 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Clcn1Q64347 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
Clcn1Q64347 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Clcn1Q64347 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Clcn1Q64347 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
Clcn1Q64347 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Clcn1Q64347 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
Clcn1Q64347 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Clcn1Q64347 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
Clcn1Q64347 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Clcn1Q64347 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
Clcn1Q64347 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC29.41■■■□□ 2.3
Clcn1Q64347 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
Clcn1Q64347 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
Clcn1Q64347 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Clcn1Q64347 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC29.4■■■□□ 2.3
Clcn1Q64347 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Clcn1Q64347 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Clcn1Q64347 Amer2-203ENSMUST00000225247 2662 ntBASIC29.38■■■□□ 2.29
Clcn1Q64347 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC29.38■■■□□ 2.29
Clcn1Q64347 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Clcn1Q64347 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Clcn1Q64347 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
Clcn1Q64347 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
Clcn1Q64347 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC29.36■■■□□ 2.29
Clcn1Q64347 Gm5067-201ENSMUST00000170449 1009 ntBASIC29.36■■■□□ 2.29
Clcn1Q64347 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Clcn1Q64347 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Clcn1Q64347 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Clcn1Q64347 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Clcn1Q64347 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Clcn1Q64347 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Clcn1Q64347 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Clcn1Q64347 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC29.34■■■□□ 2.29
Clcn1Q64347 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
Clcn1Q64347 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC29.34■■■□□ 2.29
Clcn1Q64347 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC29.34■■■□□ 2.29
Clcn1Q64347 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
Clcn1Q64347 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Clcn1Q64347 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC29.33■■■□□ 2.29
Clcn1Q64347 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC29.33■■■□□ 2.29
Clcn1Q64347 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC29.31■■■□□ 2.28
Clcn1Q64347 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC29.3■■■□□ 2.28
Clcn1Q64347 Gm14121-201ENSMUST00000121441 1380 ntBASIC29.3■■■□□ 2.28
Clcn1Q64347 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
Clcn1Q64347 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC29.3■■■□□ 2.28
Clcn1Q64347 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
Clcn1Q64347 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC29.29■■■□□ 2.28
Clcn1Q64347 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Clcn1Q64347 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Clcn1Q64347 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
Clcn1Q64347 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Clcn1Q64347 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
Clcn1Q64347 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Clcn1Q64347 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC29.27■■■□□ 2.28
Clcn1Q64347 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
Clcn1Q64347 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
Clcn1Q64347 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Clcn1Q64347 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
Clcn1Q64347 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Clcn1Q64347 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
Clcn1Q64347 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC29.25■■■□□ 2.27
Clcn1Q64347 Gm10420-201ENSMUST00000121713 882 ntBASIC29.25■■■□□ 2.27
Clcn1Q64347 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
Clcn1Q64347 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
Clcn1Q64347 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Clcn1Q64347 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Clcn1Q64347 Gm37847-201ENSMUST00000192163 1497 ntBASIC29.23■■■□□ 2.27
Clcn1Q64347 Gm31748-201ENSMUST00000194938 1497 ntBASIC29.23■■■□□ 2.27
Clcn1Q64347 Terc-201ENSMUST00000082862 423 ntBASIC29.23■■■□□ 2.27
Clcn1Q64347 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
Clcn1Q64347 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
Clcn1Q64347 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
Clcn1Q64347 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
Clcn1Q64347 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC29.22■■■□□ 2.27
Clcn1Q64347 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC29.22■■■□□ 2.27
Clcn1Q64347 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC29.21■■■□□ 2.27
Clcn1Q64347 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Clcn1Q64347 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC29.21■■■□□ 2.27
Clcn1Q64347 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Clcn1Q64347 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC29.21■■■□□ 2.27
Clcn1Q64347 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
Clcn1Q64347 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC29.2■■■□□ 2.26
Clcn1Q64347 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
Clcn1Q64347 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
Clcn1Q64347 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Clcn1Q64347 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Retrieved 100 of 76,532 protein–RNA pairs in 72.7 ms