Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC26.92■■□□□ 1.9
Col11a1Q61245 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
Col11a1Q61245 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Col11a1Q61245 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC26.92■■□□□ 1.9
Col11a1Q61245 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Col11a1Q61245 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Col11a1Q61245 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
Col11a1Q61245 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Col11a1Q61245 Terc-201ENSMUST00000082862 423 ntBASIC26.9■■□□□ 1.9
Col11a1Q61245 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Col11a1Q61245 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.9■■□□□ 1.9
Col11a1Q61245 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Col11a1Q61245 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Col11a1Q61245 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Col11a1Q61245 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC26.88■■□□□ 1.89
Col11a1Q61245 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC26.88■■□□□ 1.89
Col11a1Q61245 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC26.87■■□□□ 1.89
Col11a1Q61245 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
Col11a1Q61245 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC26.86■■□□□ 1.89
Col11a1Q61245 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Col11a1Q61245 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
Col11a1Q61245 AC153911.1-201ENSMUST00000220378 758 ntBASIC26.85■■□□□ 1.89
Col11a1Q61245 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Col11a1Q61245 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Col11a1Q61245 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Col11a1Q61245 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Col11a1Q61245 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
Col11a1Q61245 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Col11a1Q61245 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Col11a1Q61245 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Col11a1Q61245 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Col11a1Q61245 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC26.81■■□□□ 1.88
Col11a1Q61245 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
Col11a1Q61245 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Col11a1Q61245 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Col11a1Q61245 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Col11a1Q61245 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
Col11a1Q61245 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Col11a1Q61245 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
Col11a1Q61245 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Col11a1Q61245 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Col11a1Q61245 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC26.79■■□□□ 1.88
Col11a1Q61245 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Col11a1Q61245 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
Col11a1Q61245 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC26.77■■□□□ 1.88
Col11a1Q61245 AC093043.1-201ENSMUST00000226700 898 ntBASIC26.77■■□□□ 1.88
Col11a1Q61245 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Col11a1Q61245 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC26.76■■□□□ 1.88
Col11a1Q61245 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
Col11a1Q61245 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC26.76■■□□□ 1.87
Col11a1Q61245 Gm43566-201ENSMUST00000196851 808 ntBASIC26.76■■□□□ 1.87
Col11a1Q61245 Gm14121-201ENSMUST00000121441 1380 ntBASIC26.76■■□□□ 1.87
Col11a1Q61245 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC26.75■■□□□ 1.87
Col11a1Q61245 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
Col11a1Q61245 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Col11a1Q61245 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Col11a1Q61245 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Col11a1Q61245 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Col11a1Q61245 Gm15820-201ENSMUST00000201566 728 ntBASIC26.73■■□□□ 1.87
Col11a1Q61245 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC26.73■■□□□ 1.87
Col11a1Q61245 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Col11a1Q61245 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC26.72■■□□□ 1.87
Col11a1Q61245 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Col11a1Q61245 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Col11a1Q61245 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC26.72■■□□□ 1.87
Col11a1Q61245 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Col11a1Q61245 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Col11a1Q61245 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC26.72■■□□□ 1.87
Col11a1Q61245 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
Col11a1Q61245 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Col11a1Q61245 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Col11a1Q61245 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC26.71■■□□□ 1.87
Col11a1Q61245 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Col11a1Q61245 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Col11a1Q61245 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Col11a1Q61245 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Col11a1Q61245 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Col11a1Q61245 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
Col11a1Q61245 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Col11a1Q61245 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Col11a1Q61245 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Col11a1Q61245 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Col11a1Q61245 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC26.69■■□□□ 1.86
Col11a1Q61245 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Col11a1Q61245 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC26.68■■□□□ 1.86
Col11a1Q61245 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC26.67■■□□□ 1.86
Col11a1Q61245 Gm14117-201ENSMUST00000122417 843 ntBASIC26.67■■□□□ 1.86
Col11a1Q61245 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
Col11a1Q61245 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Col11a1Q61245 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
Col11a1Q61245 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC26.65■■□□□ 1.86
Col11a1Q61245 Gm13238-201ENSMUST00000117655 780 ntBASIC26.65■■□□□ 1.86
Col11a1Q61245 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
Col11a1Q61245 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC26.65■■□□□ 1.86
Col11a1Q61245 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC26.64■■□□□ 1.86
Col11a1Q61245 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
Col11a1Q61245 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Col11a1Q61245 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Col11a1Q61245 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Col11a1Q61245 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms