Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cx3cl1O35188 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.44■■□□□ 1.02
Cx3cl1O35188 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC21.44■■□□□ 1.02
Cx3cl1O35188 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.44■■□□□ 1.02
Cx3cl1O35188 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cx3cl1O35188 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cx3cl1O35188 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Cx3cl1O35188 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cx3cl1O35188 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cx3cl1O35188 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.43■■□□□ 1.02
Cx3cl1O35188 Gm6311-201ENSMUST00000073790 878 ntBASIC21.43■■□□□ 1.02
Cx3cl1O35188 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Cx3cl1O35188 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cx3cl1O35188 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Cx3cl1O35188 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Cx3cl1O35188 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cx3cl1O35188 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC21.41■■□□□ 1.02
Cx3cl1O35188 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cx3cl1O35188 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.41■■□□□ 1.02
Cx3cl1O35188 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC21.41■■□□□ 1.02
Cx3cl1O35188 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cx3cl1O35188 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cx3cl1O35188 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Cx3cl1O35188 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Cx3cl1O35188 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.4■■□□□ 1.02
Cx3cl1O35188 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
Cx3cl1O35188 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC21.39■■□□□ 1.01
Cx3cl1O35188 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21.39■■□□□ 1.01
Cx3cl1O35188 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Cx3cl1O35188 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Cx3cl1O35188 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Cx3cl1O35188 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cx3cl1O35188 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cx3cl1O35188 Gm45364-201ENSMUST00000210883 159 ntBASIC21.37■■□□□ 1.01
Cx3cl1O35188 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cx3cl1O35188 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC21.37■■□□□ 1.01
Cx3cl1O35188 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cx3cl1O35188 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cx3cl1O35188 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cx3cl1O35188 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cx3cl1O35188 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cx3cl1O35188 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cx3cl1O35188 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Cx3cl1O35188 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.35■■□□□ 1.01
Cx3cl1O35188 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.35■■□□□ 1.01
Cx3cl1O35188 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cx3cl1O35188 Gm4419-202ENSMUST00000226239 1431 ntBASIC21.35■■□□□ 1.01
Cx3cl1O35188 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cx3cl1O35188 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cx3cl1O35188 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cx3cl1O35188 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.34■■□□□ 1.01
Cx3cl1O35188 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Cx3cl1O35188 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cx3cl1O35188 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cx3cl1O35188 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cx3cl1O35188 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1.01
Cx3cl1O35188 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cx3cl1O35188 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cx3cl1O35188 Pkd1-207ENSMUST00000228550 1050 ntBASIC21.33■■□□□ 1.01
Cx3cl1O35188 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1
Cx3cl1O35188 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Cx3cl1O35188 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Cx3cl1O35188 Gm9812-201ENSMUST00000061934 968 ntBASIC21.32■■□□□ 1
Cx3cl1O35188 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cx3cl1O35188 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cx3cl1O35188 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cx3cl1O35188 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cx3cl1O35188 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Cx3cl1O35188 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cx3cl1O35188 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cx3cl1O35188 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Cx3cl1O35188 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cx3cl1O35188 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC21.29■■□□□ 1
Cx3cl1O35188 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cx3cl1O35188 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cx3cl1O35188 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Cx3cl1O35188 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.27■■□□□ 1
Cx3cl1O35188 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.27■■□□□ 1
Cx3cl1O35188 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Cx3cl1O35188 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.27■■□□□ 1
Cx3cl1O35188 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC21.26■□□□□ 0.99
Cx3cl1O35188 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Cx3cl1O35188 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cx3cl1O35188 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
Cx3cl1O35188 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cx3cl1O35188 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC21.25■□□□□ 0.99
Cx3cl1O35188 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cx3cl1O35188 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC21.25■□□□□ 0.99
Cx3cl1O35188 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cx3cl1O35188 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cx3cl1O35188 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cx3cl1O35188 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cx3cl1O35188 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cx3cl1O35188 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Cx3cl1O35188 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cx3cl1O35188 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cx3cl1O35188 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cx3cl1O35188 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cx3cl1O35188 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cx3cl1O35188 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 150.1 ms