RNA–Protein interactions for RNA: ENST00000504669.5

ITGA1-203, Transcript of integrin subunit alpha 1, humanhuman

TSL 1 (best)

Gene ITGA1, Length 6,276 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA1-203ENST00000504669 MYT1Q01538 1121 aa18.12■□□□□ 0.49
ITGA1-203ENST00000504669 PELP1Q8IZL8 1130 aaKnown RBP17.89■□□□□ 0.45
ITGA1-203ENST00000504669 TTBK1Q5TCY1 1321 aaPredicted RBP17.03■□□□□ 0.32
ITGA1-203ENST00000504669 ERICH6Q7L0X2 663 aa16.93■□□□□ 0.3
ITGA1-203ENST00000504669 CCER1Q8TC90 406 aaPredicted RBP16.55■□□□□ 0.24
ITGA1-203ENST00000504669 CENPBP07199 599 aaPredicted RBP16.48■□□□□ 0.23
ITGA1-203ENST00000504669 YTHDC1Q96MU7 727 aaKnown RBP16.19■□□□□ 0.18
ITGA1-203ENST00000504669 ZEB1P37275 1124 aaPredicted RBP15.87■□□□□ 0.13
ITGA1-203ENST00000504669 NEFLP07196 543 aa15.8■□□□□ 0.12
ITGA1-203ENST00000504669 PCGF6Q9BYE7 350 aa15.76■□□□□ 0.11
ITGA1-203ENST00000504669 GLIPR1L2Q4G1C9 344 aa15.7■□□□□ 0.1
ITGA1-203ENST00000504669 RTL5Q5HYW3 569 aaPredicted RBP15.67■□□□□ 0.1
ITGA1-203ENST00000504669 RANGAP1P46060 587 aaPredicted RBP15.57■□□□□ 0.08
ITGA1-203ENST00000504669 DAXXQ9UER7 740 aaPredicted RBP15.53■□□□□ 0.08
ITGA1-203ENST00000504669 EIF5BO60841 1220 aaKnown RBP15.51■□□□□ 0.07
ITGA1-203ENST00000504669 HRCP23327 699 aa15.49■□□□□ 0.07
ITGA1-203ENST00000504669 SLC24A1O60721 1099 aa15.29■□□□□ 0.04
ITGA1-203ENST00000504669 GTF3C3Q9Y5Q9 886 aa15.27■□□□□ 0.03
ITGA1-203ENST00000504669 SUPT5HO00267 1087 aaKnown RBP15.26■□□□□ 0.03
ITGA1-203ENST00000504669 ZNF316A6NFI3 1004 aaPredicted RBP15.23■□□□□ 0.03
ITGA1-203ENST00000504669 BCL11AQ9H165 835 aa15.22■□□□□ 0.03
ITGA1-203ENST00000504669 MYT1LQ9UL68 1186 aa15.15■□□□□ 0.02
ITGA1-203ENST00000504669 EHMT2Q96KQ7 1210 aa15.12■□□□□ 0.01
ITGA1-203ENST00000504669 PPARGC1BQ86YN6 1023 aaKnown RBP15.07■□□□□ 0
ITGA1-203ENST00000504669 ACIN1Q9UKV3 1341 aaKnown RBP14.96□□□□□ -0.01
ITGA1-203ENST00000504669 CLSPNQ9HAW4 1339 aa14.94□□□□□ -0.02
ITGA1-203ENST00000504669 APLP2Q06481 763 aa14.94□□□□□ -0.02
ITGA1-203ENST00000504669 CDK11AQ9UQ88 783 aaPredicted RBP14.93□□□□□ -0.02
ITGA1-203ENST00000504669 BCANQ96GW7 911 aa14.88□□□□□ -0.03
ITGA1-203ENST00000504669 ANP32EQ9BTT0 268 aa14.88□□□□□ -0.03
ITGA1-203ENST00000504669 DIEXFQ68CQ4 756 aaKnown RBP14.85□□□□□ -0.03
ITGA1-203ENST00000504669 DCAF8L2P0C7V8 631 aa14.83□□□□□ -0.04
ITGA1-203ENST00000504669 TRIM26Q12899 539 aaPredicted RBP14.82□□□□□ -0.04
ITGA1-203ENST00000504669 TNNT2P45379 298 aaPredicted RBP14.77□□□□□ -0.05
ITGA1-203ENST00000504669 SCAF1Q9H7N4 1312 aaKnown RBP14.75□□□□□ -0.05
ITGA1-203ENST00000504669 ANP32AP39687 249 aaKnown RBP14.75□□□□□ -0.05
ITGA1-203ENST00000504669 CDK11BP21127 795 aaKnown RBP14.71□□□□□ -0.05
ITGA1-203ENST00000504669 PRKCSHP14314 528 aaPredicted RBP14.71□□□□□ -0.05
ITGA1-203ENST00000504669 POLR3GLQ9BT43 218 aa14.7□□□□□ -0.06
ITGA1-203ENST00000504669 NBR1Q14596 966 aa14.69□□□□□ -0.06
ITGA1-203ENST00000504669 ANP32BQ92688 251 aaKnown RBP14.61□□□□□ -0.07
ITGA1-203ENST00000504669 ZNF326Q5BKZ1 582 aaKnown RBP14.59□□□□□ -0.07
ITGA1-203ENST00000504669 RTN4Q9NQC3 1192 aaKnown RBP14.57□□□□□ -0.08
ITGA1-203ENST00000504669 PODXL2Q9NZ53 605 aa14.57□□□□□ -0.08
ITGA1-203ENST00000504669 AMER1Q5JTC6 1135 aaPredicted RBP14.54□□□□□ -0.08
ITGA1-203ENST00000504669 NCLP19338 710 aaKnown RBP14.54□□□□□ -0.08
ITGA1-203ENST00000504669 SHROOM4Q9ULL8 1493 aa14.5□□□□□ -0.09
ITGA1-203ENST00000504669 FAM9AQ8IZU1 332 aaPredicted RBP14.5□□□□□ -0.09
ITGA1-203ENST00000504669 TRIM44Q96DX7 344 aaPredicted RBP14.49□□□□□ -0.09
ITGA1-203ENST00000504669 NAP1L5Q96NT1 182 aaPredicted RBP14.49□□□□□ -0.09
ITGA1-203ENST00000504669 NPM2Q86SE8 214 aaKnown RBP14.48□□□□□ -0.09
ITGA1-203ENST00000504669 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.46□□□□□ -0.09
ITGA1-203ENST00000504669 ZBTB47Q9UFB7 747 aaPredicted RBP14.4□□□□□ -0.1
ITGA1-203ENST00000504669 NEUROD1Q13562 356 aa14.38□□□□□ -0.11
ITGA1-203ENST00000504669 PKNOX2Q96KN3 472 aa14.37□□□□□ -0.11
ITGA1-203ENST00000504669 ERICH6BQ5W0A0 696 aa14.36□□□□□ -0.11
ITGA1-203ENST00000504669 DEKP35659 375 aaKnown RBP14.33□□□□□ -0.12
ITGA1-203ENST00000504669 FKBP8Q14318 412 aa14.32□□□□□ -0.12
ITGA1-203ENST00000504669 A0A0U1RQG5 324 aaPredicted RBP14.3□□□□□ -0.12
ITGA1-203ENST00000504669 ARXQ96QS3 562 aa14.3□□□□□ -0.12
ITGA1-203ENST00000504669 HSP90AA1P07900 732 aaKnown RBP14.3□□□□□ -0.12
ITGA1-203ENST00000504669 CCDC136Q96JN2 1154 aa14.27□□□□□ -0.13
ITGA1-203ENST00000504669 NEFMP07197 916 aa14.26□□□□□ -0.13
ITGA1-203ENST00000504669 VSIG10Q8N0Z9 540 aa14.23□□□□□ -0.13
ITGA1-203ENST00000504669 CSRNP3Q8WYN3 585 aa14.22□□□□□ -0.13
ITGA1-203ENST00000504669 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.2□□□□□ -0.14
ITGA1-203ENST00000504669 CNGB1Q14028 1251 aaPredicted RBP14.13□□□□□ -0.15
ITGA1-203ENST00000504669 PTMSP20962 102 aa14.12□□□□□ -0.15
ITGA1-203ENST00000504669 ANP32CO43423 234 aa14.11□□□□□ -0.15
ITGA1-203ENST00000504669 CALRP27797 417 aaKnown RBP14.1□□□□□ -0.15
ITGA1-203ENST00000504669 TNNT3P45378 269 aaPredicted RBP14.09□□□□□ -0.15
ITGA1-203ENST00000504669 DDRGK1Q96HY6 314 aa14.08□□□□□ -0.16
ITGA1-203ENST00000504669 APPP05067 770 aa14.06□□□□□ -0.16
ITGA1-203ENST00000504669 RSPH6AQ9H0K4 717 aa14.06□□□□□ -0.16
ITGA1-203ENST00000504669 HSP90AA2PQ14568 343 aaPredicted RBP14.05□□□□□ -0.16
ITGA1-203ENST00000504669 NOP58Q9Y2X3 529 aaKnown RBP14.05□□□□□ -0.16
ITGA1-203ENST00000504669 PPM1GO15355 546 aaPredicted RBP14.03□□□□□ -0.16
ITGA1-203ENST00000504669 TRIM41Q8WV44 630 aa14.02□□□□□ -0.16
ITGA1-203ENST00000504669 DNTTIP2Q5QJE6 756 aaKnown RBP14.02□□□□□ -0.16
ITGA1-203ENST00000504669 ARID4BQ4LE39 1312 aaPredicted RBP14.02□□□□□ -0.17
ITGA1-203ENST00000504669 ITGAEP38570 1179 aa14□□□□□ -0.17
ITGA1-203ENST00000504669 HAP1P54257 671 aaPredicted RBP13.98□□□□□ -0.17
ITGA1-203ENST00000504669 UPF2Q9HAU5 1272 aaKnown RBP13.98□□□□□ -0.17
ITGA1-203ENST00000504669 PDE4CQ08493 712 aa13.94□□□□□ -0.18
ITGA1-203ENST00000504669 HNRNPUL2Q1KMD3 747 aaKnown RBP13.93□□□□□ -0.18
ITGA1-203ENST00000504669 PTMAP06454 111 aaKnown RBP13.92□□□□□ -0.18
ITGA1-203ENST00000504669 ANO8Q9HCE9 1232 aaPredicted RBP13.92□□□□□ -0.18
ITGA1-203ENST00000504669 L1TD1Q5T7N2 865 aaKnown RBP13.91□□□□□ -0.18
ITGA1-203ENST00000504669 LAS1LQ9Y4W2 734 aaKnown RBP13.91□□□□□ -0.18
ITGA1-203ENST00000504669 ARID3AQ99856 593 aa13.89□□□□□ -0.19
ITGA1-203ENST00000504669 CANXP27824 592 aaKnown RBP13.89□□□□□ -0.19
ITGA1-203ENST00000504669 UBTFP17480 764 aaKnown RBP13.88□□□□□ -0.19
ITGA1-203ENST00000504669 ATP1B4Q9UN42 357 aaPredicted RBP13.87□□□□□ -0.19
ITGA1-203ENST00000504669 TIMELESSQ9UNS1 1208 aa13.86□□□□□ -0.19
ITGA1-203ENST00000504669 MSNP26038 577 aaKnown RBP13.85□□□□□ -0.19
ITGA1-203ENST00000504669 BECN1Q14457 450 aa13.84□□□□□ -0.19
ITGA1-203ENST00000504669 PNNQ9H307 717 aaKnown RBP13.84□□□□□ -0.19
ITGA1-203ENST00000504669 LOC105371045A0A1W2PR82 267 aa13.79□□□□□ -0.2
ITGA1-203ENST00000504669 SUPT16HQ9Y5B9 1047 aaKnown RBP13.79□□□□□ -0.2
ITGA1-203ENST00000504669 CHAF1AQ13111 956 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms