RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CYP2A7P20853 494 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 TNFAIP3P21580 790 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 MPZP25189 248 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 MAN1A1P33908 653 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PSMB10P40306 273 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 OPRL1P41146 370 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PIK3CAP42336 1068 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 MAGEA11P43364 429 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 LEPRP48357 1165 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 AMPHP49418 695 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PPM1FP49593 454 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 PNLIPRP2P54317 469 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 GALCP54803 685 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 CDH8P55286 799 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 CLDN15P56746 228 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SNRPEP62304 92 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 SNRPD1P62314 119 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 CSNK2BP67870 215 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PPP2R2BQ00005 443 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SETQ01105 290 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 TFAP4Q01664 338 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 GCNT1Q02742 428 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 GUCY2DQ02846 1103 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 DMPKQ09013 629 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 CALCOCO2Q13137 446 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SIM2Q14190 667 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 LY6DQ14210 128 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 KRT32Q14532 448 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PCLAFQ15004 111 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 CA9Q16790 459 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 DUSP28Q4G0W2 176 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 FAM98BQ52LJ0 330 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 PHLDA2Q53GA4 152 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 RAB41Q5JT25 222 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 GCNT6Q5T4J0 391 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 CCDC30Q5VVM6 783 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 KRT79Q5XKE5 535 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 ADALQ6DHV7 355 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 FAM180BQ6P0A1 224 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 KLC3Q6P597 504 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 FIGLAQ6QHK4 219 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 LEKR1Q6ZMV7 388 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 IKBIPQ70UQ0 350 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 BTN2A1Q7KYR7 527 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SZRD1Q7Z422 152 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 HAUS6Q7Z4H7 955 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 CPLX4Q7Z7G2 160 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 TMPRSS11BQ86T26 416 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 LDB1Q86U70 411 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 KBTBD6Q86V97 674 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 LINC00346Q8IVM7 164 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 ARID3BQ8IVW6 561 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 FAM114A1Q8IWE2 563 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 ADGRF2Q8IZF7 708 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 KIRREL3Q8IZU9 778 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 ARHGAP24Q8N264 748 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 MARVELD2Q8N4S9 558 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 ZNF383Q8NA42 475 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PAPD5Q8NDF8 572 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 NPEPL1Q8NDH3 523 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 RDM1Q8NG50 284 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 OR11H4Q8NGC9 324 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 OR13J1Q8NGT2 312 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 OR1L3Q8NH93 324 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 MOSPD2Q8NHP6 518 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 C11orf45Q8TAV5 145 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 TBC1D16Q8TBP0 767 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 RNF128Q8TEB7 428 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PPP4R1Q8TF05 950 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 NOC3LQ8WTT2 800 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 PTPMT1Q8WUK0 201 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 GATAD1Q8WUU5 269 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SMARCE1Q969G3 411 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 TRIM63Q969Q1 353 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 AZIN2Q96A70 460 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 CENPTQ96BT3 561 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 NSUN4Q96CB9 384 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 PRICKLE1Q96MT3 831 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 FAM218AQ96MZ4 157 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 ZIM3Q96PE6 472 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 OR6C1Q96RD1 312 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 MYADMQ96S97 322 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 PAFAH2Q99487 392 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 TREX2Q9BQ50 279 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 OVOL2Q9BRP0 275 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 CHCHD6Q9BRQ6 235 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 RHNO1Q9BSD3 238 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 RTBDNQ9BSG5 229 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 CLEC7AQ9BXN2 247 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SLC26A6Q9BXS9 759 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SPATC1LQ9H0A9 340 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SLITRK2Q9H156 845 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 DNAJC18Q9H819 358 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 HHATLQ9HCP6 504 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 SDR39U1Q9NRG7 319 aaPredicted RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 OLFML3Q9NRN5 406 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 RRP7BPQ9NSQ0 103 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 MAN2C1Q9NTJ4 1040 aa0.37□□□□□ -2.35
VPS35-212ENST00000640313 OLA1Q9NTK5 396 aaKnown RBP0.37□□□□□ -2.35
VPS35-212ENST00000640313 INTS9Q9NV88 658 aaKnown RBP0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms