RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 NEK11Q8NG66 645 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 SPATA22Q8NHS9 363 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 SUN3Q8TAQ9 357 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 DTX3LQ8TDB6 740 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 THAP3Q8WTV1 239 aaPredicted RBP13.92□□□□□ -0.18
CLN3-249ENST00000636685 GPR137Q96N19 417 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 FANCLQ9NW38 375 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 SPHK1Q9NYA1 384 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 EURLQ9NYK6 297 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 NXT1Q9UKK6 140 aaKnown RBP13.92□□□□□ -0.18
CLN3-249ENST00000636685 PLCL2Q9UPR0 1127 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 ICKQ9UPZ9 632 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 LUC7L2Q9Y383 392 aaKnown RBP13.92□□□□□ -0.18
CLN3-249ENST00000636685 STAB1Q9NY15 2570 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 A0A0J9YY10 115 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 ADAM10O14672 748 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 FTLP02792 175 aaPredicted RBP13.91□□□□□ -0.18
CLN3-249ENST00000636685 ARSFP54793 590 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 IFI35P80217 286 aaPredicted RBP13.91□□□□□ -0.18
CLN3-249ENST00000636685 ITGA9Q13797 1035 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 DPYSL3Q14195 570 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 KRT31Q15323 416 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 DPCR1Q3MIW9 517 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 BCL7AQ4VC05 210 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 TFDP3Q5H9I0 405 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 FKBP15Q5T1M5 1219 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 TMEM198Q66K66 360 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 CCDC70Q6NSX1 233 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 PPP1R2P3Q6NXS1 205 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 DTWD1Q8N5C7 304 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 AMER2Q8N7J2 671 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 FLVCR1-AS1Q8TAF5 88 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 FAM71BQ8TC56 605 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 PHF10Q8WUB8 498 aaKnown RBP13.91□□□□□ -0.18
CLN3-249ENST00000636685 NINJ1Q92982 152 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 TADA1Q96BN2 335 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 LINC00615Q96LM1 132 aaPredicted RBP13.91□□□□□ -0.18
CLN3-249ENST00000636685 SRPK1Q96SB4 655 aaKnown RBP13.91□□□□□ -0.18
CLN3-249ENST00000636685 DMRTA2Q96SC8 542 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 LIME1Q9H400 295 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 IL17CQ9P0M4 197 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 SCINQ9Y6U3 715 aa13.91□□□□□ -0.18
CLN3-249ENST00000636685 NSG1A0A0A6YYJ2 146 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 KLHL33A6NCF5 533 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 OR5H15A6NDH6 313 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 VSTM2BA6NLU5 285 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 FOXO6A8MYZ6 492 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 NPIPA5E9PKD4 350 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 DSCR3O14972 297 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 WFS1O76024 890 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 BMP10O95393 424 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 SERPINA7P05543 415 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 PYGMP11217 842 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 COX6A1P12074 109 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 FERP16591 822 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 MX2P20592 715 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 MCM3P25205 808 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 NSG1P42857 185 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 ARSEP51690 589 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 KLC1Q07866 573 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 OLIG2Q13516 323 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 ZDHHC20Q5W0Z9 365 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 UNC5AQ6ZN44 842 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 NDUFAF7Q7L592 441 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 IRF2BP2Q7Z5L9 587 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 BIVMQ86UB2 503 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 DOLPP1Q86YN1 238 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 DMRTC2Q8IXT2 367 aaPredicted RBP13.9□□□□□ -0.18
CLN3-249ENST00000636685 SPATA3Q8NHX4 192 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 HM13Q8TCT9 377 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 BTBD6Q96KE9 485 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 SLC25A51Q9H1U9 297 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 OR52A5Q9H2C5 316 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 MVB12BQ9H7P6 319 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 CUTCQ9NTM9 273 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 SMOXQ9NWM0 555 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 COQ3Q9NZJ6 369 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 PPT2Q9UMR5 302 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 NPIPA1Q9UND3 350 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 KLHL20Q9Y2M5 609 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 MAU2Q9Y6X3 613 aa13.9□□□□□ -0.18
CLN3-249ENST00000636685 NKX2-6A6NCS4 301 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 E9PLN8 166 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 IFRD1O00458 451 aaPredicted RBP13.89□□□□□ -0.19
CLN3-249ENST00000636685 CHRM5P08912 532 aaPredicted RBP13.89□□□□□ -0.19
CLN3-249ENST00000636685 ABOP16442 354 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 FDXRP22570 491 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 PDHA2P29803 388 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 CARSP49589 748 aaKnown RBP13.89□□□□□ -0.19
CLN3-249ENST00000636685 ADAM8P78325 824 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 EEF1A2Q05639 463 aaKnown RBP13.89□□□□□ -0.19
CLN3-249ENST00000636685 BOP1Q14137 746 aaKnown RBP13.89□□□□□ -0.19
CLN3-249ENST00000636685 PTPRCAPQ14761 206 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 ATP13A4Q4VNC1 1196 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 KRTCAP3Q53RY4 240 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 ZNF766Q5HY98 468 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 CES4AQ5XG92 561 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 ATG9BQ674R7 924 aa13.89□□□□□ -0.19
CLN3-249ENST00000636685 MCATQ8IVS2 390 aaKnown RBP13.89□□□□□ -0.19
CLN3-249ENST00000636685 ZNF398Q8TD17 642 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms