RNA–Protein interactions for RNA: ENST00000636214.1

PNKP-225, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 805 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-225ENST00000636214 DCUN1D3Q8IWE4 304 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 SLC22A15Q8IZD6 547 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 MPP5Q8N3R9 675 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 RAB42Q8N4Z0 105 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 GLIS1Q8NBF1 620 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 SLC22A18Q96BI1 424 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 SGSM3Q96HU1 749 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 FOPNLQ96NB1 174 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 AP1M1Q9BXS5 423 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 ING2Q9H160 280 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 INTS7Q9NVH2 962 aaKnown RBP17.31■□□□□ 0.36
PNKP-225ENST00000636214 SPHK1Q9NYA1 384 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 SRPK3Q9UPE1 567 aa17.31■□□□□ 0.36
PNKP-225ENST00000636214 UBR5O95071 2799 aaPredicted RBP17.31■□□□□ 0.36
PNKP-225ENST00000636214 MED13Q9UHV7 2174 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 SNRNP200O75643 2136 aaKnown RBP17.3■□□□□ 0.36
PNKP-225ENST00000636214 KPNA5O15131 536 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 CD63P08962 238 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 ATXN8OSP0DMR3 200 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 PKLRP30613 574 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 CCR7P32248 378 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 PTGIRP43119 386 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 RRADP55042 308 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 CHAF1BQ13112 559 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 CPZQ66K79 652 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 TLDC1Q6P9B6 456 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 FAM198BQ6UWH4 519 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 UNC5DQ6UXZ4 953 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 SDCCAG8Q86SQ7 713 aaPredicted RBP17.3■□□□□ 0.36
PNKP-225ENST00000636214 LDB1Q86U70 411 aaPredicted RBP17.3■□□□□ 0.36
PNKP-225ENST00000636214 LRRC6Q86X45 466 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 DHRS4Q9BTZ2 278 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 RAB11FIP5Q9BXF6 653 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 TRIM55Q9BYV6 548 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 CHRNA10Q9GZZ6 450 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.3■□□□□ 0.36
PNKP-225ENST00000636214 NDOR1Q9UHB4 597 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 PTPN13Q12923 2485 aa17.3■□□□□ 0.36
PNKP-225ENST00000636214 ZSCAN9O15535 394 aaPredicted RBP17.29■□□□□ 0.36
PNKP-225ENST00000636214 TMEM63AO94886 807 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 EIF3BP55884 814 aaKnown RBP17.29■□□□□ 0.36
PNKP-225ENST00000636214 CRADDP78560 199 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 FOXK1P85037 733 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 CDK16Q00536 496 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 SEMA3AQ14563 771 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 SIX1Q15475 284 aaPredicted RBP17.29■□□□□ 0.36
PNKP-225ENST00000636214 ZNF789Q5FWF6 425 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 COLEC12Q5KU26 742 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 MLIPQ5VWP3 458 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 LCN10Q6JVE6 187 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 MRNIPQ6NTE8 343 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 ZNF662Q6ZS27 426 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 OTOAQ7RTW8 1153 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 ATCAYQ86WG3 371 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 KRT222Q8N1A0 295 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 PROKR1Q8TCW9 393 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 DLG3Q92796 817 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 PLCL2Q9UPR0 1127 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 PCDHGA9Q9Y5G4 932 aaKnown RBP17.29■□□□□ 0.36
PNKP-225ENST00000636214 DOPEY2Q9Y3R5 2298 aa17.29■□□□□ 0.36
PNKP-225ENST00000636214 IQCF5A8MTL0 148 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 PAMP19021 973 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 AOAHP28039 575 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 KCNJ1P48048 391 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 DCDP81605 110 aaKnown RBP17.28■□□□□ 0.36
PNKP-225ENST00000636214 KYNUQ16719 465 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 RNF187Q5TA31 235 aaPredicted RBP17.28■□□□□ 0.36
PNKP-225ENST00000636214 C1orf189Q5VU69 101 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 RHBDD2Q6NTF9 364 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 MED25Q71SY5 747 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 TAX1BP1Q86VP1 789 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 ZNF655Q8N720 491 aaPredicted RBP17.28■□□□□ 0.36
PNKP-225ENST00000636214 EFCAB3Q8N7B9 438 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 TMEM102Q8N9M5 508 aaPredicted RBP17.28■□□□□ 0.36
PNKP-225ENST00000636214 LKAAEAR1Q8TD35 194 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 DENND1AQ8TEH3 1009 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 IP6K3Q96PC2 410 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 NDC1Q9BTX1 674 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 MRM3Q9HC36 420 aaKnown RBP17.28■□□□□ 0.36
PNKP-225ENST00000636214 FAM60AQ9NP50 221 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 SAMD15Q9P1V8 674 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 IFT80Q9P2H3 777 aaPredicted RBP17.28■□□□□ 0.36
PNKP-225ENST00000636214 ZNF451Q9Y4E5 1061 aa17.28■□□□□ 0.36
PNKP-225ENST00000636214 LRRK2Q5S007 2527 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 K7EM74 188 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 GPC4O75487 556 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 S1PR4O95977 384 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 TPSB2P20231 275 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 MAGP20916 626 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 RPS3P23396 243 aaKnown RBP eCLIP17.27■□□□□ 0.36
PNKP-225ENST00000636214 MGAT1P26572 445 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 OTX2P32243 289 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 FOLR3P41439 243 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 TERF1P54274 439 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 TPSAB1Q15661 275 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 ZIC1Q15915 447 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 IGFBP7Q16270 282 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 CASC4Q6P4E1 433 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 LRRC8BQ6P9F7 803 aa17.27■□□□□ 0.36
PNKP-225ENST00000636214 VRK3Q8IV63 474 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms