RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 ITGA1P56199 1179 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 NCF4Q15080 339 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 FAM69BQ5VUD6 431 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 PPP1R21Q6ZMI0 780 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 MICALCLQ6ZW33 695 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 HPS6Q86YV9 775 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 ADGRF3Q8IZF5 1079 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 PHC3Q8NDX5 983 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 HGH1Q9BTY7 390 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 ACTR10Q9NZ32 417 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 TCAF1Q9Y4C2 921 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 MAP4K5Q9Y4K4 846 aa18.33■□□□□ 0.53
CDX1-202ENST00000616154 PCSK5Q92824 1860 aa18.33■□□□□ 0.52
CDX1-202ENST00000616154 CCDC88CQ9P219 2028 aa18.33■□□□□ 0.52
CDX1-202ENST00000616154 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.32■□□□□ 0.52
CDX1-202ENST00000616154 CCDC162PA2VCL2 907 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 E7EQ34 232 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 QSOX1O00391 747 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 HBQ1P09105 142 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 PVRP15151 417 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 GNLYP22749 145 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 MAGEA6P43360 314 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 CDK16Q00536 496 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 CYP1B1Q16678 543 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 PTCHD3Q3KNS1 767 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 CCDC38Q502W7 563 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 ZNF385CQ66K41 422 aaPredicted RBP18.32■□□□□ 0.52
CDX1-202ENST00000616154 AFTPHQ6ULP2 937 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 CDHR3Q6ZTQ4 885 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 MED25Q71SY5 747 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 ZBTB2Q8N680 514 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 CLDN19Q8N6F1 224 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 TMEM102Q8N9M5 508 aaPredicted RBP18.32■□□□□ 0.52
CDX1-202ENST00000616154 FDCSPQ8NFU4 85 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 TFGQ92734 400 aaPredicted RBP18.32■□□□□ 0.52
CDX1-202ENST00000616154 ZNF778Q96MU6 729 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 XKR8Q9H6D3 395 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 SMARCAL1Q9NZC9 954 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 G3BP2Q9UN86 482 aaKnown RBP18.32■□□□□ 0.52
CDX1-202ENST00000616154 HIVEP3Q5T1R4 2406 aa18.32■□□□□ 0.52
CDX1-202ENST00000616154 TEX15Q9BXT5 2789 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 C9J4A7 227 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 AP3B1O00203 1094 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 ZNF749O43361 778 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 DPM1O60762 260 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 RRADP55042 308 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 PRKG2Q13237 762 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 FHL5Q5TD97 284 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 LYPLAL1Q5VWZ2 237 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 ARMC3Q5W041 872 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 SPESP1Q6UW49 350 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 ZNF534Q76KX8 674 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 TAS2R42Q7RTR8 314 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 CAPZA3Q96KX2 299 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 DHRS4Q9BTZ2 278 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 NUDT9Q9BW91 350 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 SLC7A5P2Q9GIP4 190 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 KLHL25Q9H0H3 589 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 LRRC4CQ9HCJ2 640 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 SLC2A6Q9UGQ3 507 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 ICKQ9UPZ9 632 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 PADI2Q9Y2J8 665 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 ANKRD12Q6UB98 2062 aa18.31■□□□□ 0.52
CDX1-202ENST00000616154 UNC79Q9P2D8 2635 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 OR51F1A6NGY5 319 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 LIN7AO14910 233 aaPredicted RBP18.3■□□□□ 0.52
CDX1-202ENST00000616154 TPSB2P20231 275 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 AGXTP21549 392 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 KCNJ1P48048 391 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 TPSAB1Q15661 275 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 PCID2Q5JVF3 399 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 JMJD6Q6NYC1 403 aaPredicted RBP18.3■□□□□ 0.52
CDX1-202ENST00000616154 RAB43Q86YS6 212 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 HDAC10Q969S8 669 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.3■□□□□ 0.52
CDX1-202ENST00000616154 IL22Q9GZX6 179 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 CHRNA10Q9GZZ6 450 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 RRAGDQ9NQL2 400 aaPredicted RBP18.3■□□□□ 0.52
CDX1-202ENST00000616154 TREX1Q9NSU2 369 aa18.3■□□□□ 0.52
CDX1-202ENST00000616154 AGFG2O95081 481 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 GOT2P00505 430 aaKnown RBP18.29■□□□□ 0.52
CDX1-202ENST00000616154 SHMT2P34897 504 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 PAFAH1B1P43034 410 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 ATP1A4Q13733 1029 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 INPP5JQ15735 1006 aaPredicted RBP18.29■□□□□ 0.52
CDX1-202ENST00000616154 HOOK3Q86VS8 718 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 GPR135Q8IZ08 494 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 C19orf47Q8N9M1 422 aaKnown RBP18.29■□□□□ 0.52
CDX1-202ENST00000616154 Q8NA96 180 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 OR5AR1Q8NGP9 310 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 TCTN2Q96GX1 697 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 SMAD5Q99717 465 aaKnown RBP18.29■□□□□ 0.52
CDX1-202ENST00000616154 C17orf62Q9BQA9 187 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 FAM60AQ9NP50 221 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 GPR83Q9NYM4 423 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 PRSS21Q9Y6M0 314 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 AP1M2Q9Y6Q5 423 aa18.29■□□□□ 0.52
CDX1-202ENST00000616154 CCDC78A2IDD5 438 aa18.28■□□□□ 0.52
CDX1-202ENST00000616154 H3BMH7 237 aa18.28■□□□□ 0.52
CDX1-202ENST00000616154 KLF7O75840 302 aaPredicted RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms