RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 UTP6Q9NYH9 597 aaKnown RBP5.51□□□□□ -1.53
CPNE3-208ENST00000614678 ZC3H7BQ9UGR2 993 aaKnown RBP5.51□□□□□ -1.53
CPNE3-208ENST00000614678 FEZ2Q9UHY8 353 aaPredicted RBP5.51□□□□□ -1.53
CPNE3-208ENST00000614678 LNPEPQ9UIQ6 1025 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 LOC105369274A0A096LPK9 316 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 LOC102723532A0A0G2JNH3 316 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 C17orf113A0A1B0GUU1 675 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 POLR1CO15160 346 aaPredicted RBP5.51□□□□□ -1.53
CPNE3-208ENST00000614678 USP1O94782 785 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 SLCO2B1O94956 709 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 C1orf105O95561 183 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 B3GALT4O96024 378 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 CHRM5P08912 532 aaPredicted RBP5.51□□□□□ -1.53
CPNE3-208ENST00000614678 FAM87AP0C7U9 286 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 VCLP18206 1134 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 NELFEP18615 380 aaKnown RBP5.51□□□□□ -1.53
CPNE3-208ENST00000614678 ECHS1P30084 290 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 CHAF1BQ13112 559 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 ITIH4Q14624 930 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 OR4N4Q8N0Y3 316 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 OR6C4Q8NGE1 309 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 ERP44Q9BS26 406 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 ZNF768Q9H5H4 540 aaKnown RBP5.51□□□□□ -1.53
CPNE3-208ENST00000614678 SAYSD1Q9NPB0 183 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 ACSS2Q9NR19 701 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 KCND1Q9NSA2 647 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 SOHLH2Q9NX45 425 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 ACTR10Q9NZ32 417 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 DKK4Q9UBT3 224 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 ACSL5Q9ULC5 683 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 CSMD2Q7Z408 3487 aa5.51□□□□□ -1.53
CPNE3-208ENST00000614678 OR5K4A6NMS3 321 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ISM1B1AKI9 464 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 NVLO15381 856 aaKnown RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ALOX12BO75342 701 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 C1QL1O75973 258 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 TSPAN12O95859 305 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 SLC16A8O95907 504 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 PKMP14618 531 aaKnown RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 CDH3P22223 829 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 GPS2Q13227 327 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 SQSTM1Q13501 440 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 TUBB3Q13509 450 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 HIF1AQ16665 826 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 LONRF1Q17RB8 773 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 PLXDC1Q8IUK5 500 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 GPATCH11Q8N954 259 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ZNF248Q8NDW4 579 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 CERS2Q96G23 380 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ZNF514Q96K75 400 aaPredicted RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 NAP1L3Q99457 506 aaPredicted RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 STRADBQ9C0K7 418 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ATG10Q9H0Y0 220 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 CUEDC1Q9NWM3 386 aaPredicted RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 POMT2Q9UKY4 750 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 TMEM184BQ9Y519 407 aaPredicted RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 FLNBO75369 2602 aaKnown RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 TMEM150CB9EJG8 249 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 IFRD1O00458 451 aaPredicted RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 CNOT3O75175 753 aaKnown RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 SYF2O95926 243 aaKnown RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 TTPAP49638 278 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ERVPABLB-1P60509 514 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 MC2RQ01718 297 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 MEF2AQ02078 507 aaPredicted RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 GUCY2DQ02846 1103 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ERV3-1Q14264 604 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 FCRL6Q6DN72 434 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 RASGRP3Q8IV61 690 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ZNF501Q96CX3 271 aaPredicted RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 MOCOSQ96EN8 888 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 SNF8Q96H20 258 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ZNF578Q96N58 590 aaPredicted RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 PKP4Q99569 1192 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 PRORYQ9H606 182 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 MTO1Q9Y2Z2 717 aaKnown RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ASB1Q9Y576 335 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 PCDHGA4Q9Y5G9 962 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 PIPSLA2A3N6 862 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 H3BMH7 237 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 PHGDHO43175 533 aaKnown RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 DNAJB6O75190 326 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 SPAG6O75602 509 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ZIC2O95409 532 aaPredicted RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 FTH1P02794 183 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 MYBL2P10244 700 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 PGAM1P18669 254 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 CD9P21926 228 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 PAFAH1B1P43034 410 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 GABRA4P48169 554 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 KCNC1P48547 511 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 CDK16Q00536 496 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 THOC5Q13769 683 aaKnown RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 GBX1Q14549 363 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 CMC1Q7Z7K0 106 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 EXD3Q8N9H8 876 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 C2CD4AQ8NCU7 369 aaPredicted RBP5.5□□□□□ -1.53
CPNE3-208ENST00000614678 GRK7Q8WTQ7 553 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 KLHL6Q8WZ60 621 aa5.5□□□□□ -1.53
CPNE3-208ENST00000614678 ALKBH8Q96BT7 664 aaKnown RBP5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms