RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ARMCX4Q5H9R4 360 aa12.33□□□□□ -0.43
LIG1-221ENST00000613670 COQ5Q5HYK3 327 aa12.33□□□□□ -0.43
LIG1-221ENST00000613670 VARS2Q5ST30 1063 aaKnown RBP12.33□□□□□ -0.43
LIG1-221ENST00000613670 RGL4Q8IZJ4 473 aa12.33□□□□□ -0.43
LIG1-221ENST00000613670 FAM9CQ8IZT9 166 aa12.33□□□□□ -0.43
LIG1-221ENST00000613670 RBFAQ8N0V3 343 aa12.33□□□□□ -0.43
LIG1-221ENST00000613670 PYURFQ96I23 114 aa12.33□□□□□ -0.43
LIG1-221ENST00000613670 ARNT2Q9HBZ2 717 aa12.33□□□□□ -0.43
LIG1-221ENST00000613670 PAK1IP1Q9NWT1 392 aaPredicted RBP12.33□□□□□ -0.43
LIG1-221ENST00000613670 RAPGEFL1Q9UHV5 662 aa12.33□□□□□ -0.43
LIG1-221ENST00000613670 DNMT3LQ9UJW3 386 aa12.33□□□□□ -0.43
LIG1-221ENST00000613670 ANKRD66B4E2M5 251 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 SUV39H1O43463 412 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 CLDN9O95484 217 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 FSHRP23945 695 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 CHI3L1P36222 383 aaPredicted RBP12.33□□□□□ -0.44
LIG1-221ENST00000613670 EMX1Q04741 257 aaPredicted RBP12.33□□□□□ -0.44
LIG1-221ENST00000613670 USP39Q53GS9 565 aaKnown RBP12.33□□□□□ -0.44
LIG1-221ENST00000613670 PYCR3Q53H96 274 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 SLC22A15Q8IZD6 547 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 KBTBD8Q8NFY9 601 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 ARRDC2Q8TBH0 407 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 NETO1Q8TDF5 533 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 SLC22A17Q8WUG5 538 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 BRI3BPQ8WY22 251 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 MYDGFQ969H8 173 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 LRRC37AA6NMS7 1700 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 PTPRFP10586 1907 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 HHLA1C9JL84 531 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 PRRG1O14668 218 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 MUSKO15146 869 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 PRAMEF11O60813 436 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 ALDH2P05091 517 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 ADARB1P78563 741 aaKnown RBP12.33□□□□□ -0.44
LIG1-221ENST00000613670 NFKB2Q00653 900 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 CBLBQ13191 982 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 TIGD6Q17RP2 521 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 VTCN1Q7Z7D3 282 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 ANKRD13BQ86YJ7 626 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 PGBD5Q8N414 524 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 MTERF1Q99551 399 aaKnown RBP12.33□□□□□ -0.44
LIG1-221ENST00000613670 ZFYVE1Q9HBF4 777 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 COL4A5P29400 1685 aa12.33□□□□□ -0.44
LIG1-221ENST00000613670 A8MV72 311 aaPredicted RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 ACSL4O60488 711 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 OXSR1O95747 527 aaPredicted RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 RPS17P08708 135 aaKnown RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 CTSKP43235 329 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 HUNKP57058 714 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 RPS3AP61247 264 aaKnown RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 CDK5R2Q13319 367 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 KRR1Q13601 381 aaKnown RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 CLCA4Q14CN2 919 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 VEPH1Q14D04 833 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 Q6ZSR9 355 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 UBE2R2Q712K3 238 aaPredicted RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 DSG4Q86SJ6 1040 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 ZNF641Q96N77 438 aaPredicted RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 SMAD5Q99717 465 aaKnown RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 NLE1Q9NVX2 485 aaPredicted RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 AP3M1Q9Y2T2 418 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 NRXN2Q9P2S2 1712 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 IFRD1O00458 451 aaPredicted RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 TBL1XO60907 577 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 VIPP01282 170 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 ATXN1LP0C7T5 689 aaKnown RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 ATP6V1E1P36543 226 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 TPGS1Q6ZTW0 290 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 GTPBP3Q969Y2 492 aaKnown RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 VPS35Q96QK1 796 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 MAGEH1Q9H213 219 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 EHD1Q9H4M9 534 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 OSER1Q9NX31 292 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 ASB1Q9Y576 335 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 CLIC1O00299 241 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 ARHGEF9O43307 516 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 ADAM23O75077 832 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 FAM163BP0C2L3 166 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 S100A1P23297 94 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 CORO1AP31146 461 aaKnown RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 GRK3P35626 688 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 CACNG1Q06432 222 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 PLD1Q13393 1074 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 ZNF404Q494X3 552 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 LRRC73Q5JTD7 316 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 GDF6Q6KF10 455 aaPredicted RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 ZNF280BQ86YH2 543 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 DCP2Q8IU60 420 aaKnown RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 ZBTB2Q8N680 514 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 GLB1L3Q8NCI6 653 aaPredicted RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 DPH2Q9BQC3 489 aaPredicted RBP12.32□□□□□ -0.44
LIG1-221ENST00000613670 ENPP5Q9UJA9 477 aa12.32□□□□□ -0.44
LIG1-221ENST00000613670 ENGP17813 658 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 PFKLP17858 780 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 MAPKAPK2P49137 400 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 TTC3P53804 2025 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 CDH12P55289 794 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 MXD1Q05195 221 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 ELP6Q0PNE2 266 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 GRIK2Q13002 908 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms