RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TBC1D3IA0A087WXS9 549 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D3EA0A087X179 549 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D3KA0A087X1G2 549 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 LOC101059948A0A1B0GTJ6 334 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 A0A1W2PQM1 296 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 FAM90A10PA6NDY2 464 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D3FA6NER0 549 aaPredicted RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 LRRC14BA6NHZ5 514 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 C10orf142B7Z368 130 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D3LB9A6J9 549 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 MID1O15344 667 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 LATO43561 262 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 LRCH4O75427 683 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 MT-ND5P03915 603 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TMEM191BP0C7N4 346 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D3HP0C7X1 549 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 CXCL8P10145 99 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 MCF2P10911 925 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 CCL4P13236 92 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 IDEP14735 1019 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 CYP3A5P20815 502 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 MALP21145 153 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 HOXD13P35453 343 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 PPP3CCP48454 512 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 PMS2P54278 862 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TAF10Q12962 218 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 CDC16Q13042 620 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 PPP2R5CQ13362 524 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 E2F5Q15329 346 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 KHDC1Q4VXA5 237 aaKnown RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 KHDC1LQ5JSQ8 128 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 ARL6IP4Q66PJ3 421 aaKnown RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D3GQ6DHY5 549 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 NCAPH2Q6IBW4 605 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D3CQ6IPX1 549 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 SLC30A6Q6NXT4 461 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 SHC4Q6S5L8 630 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 KLHL17Q6TDP4 642 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 CWC27Q6UX04 472 aaKnown RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 DENND5BQ6ZUT9 1274 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 RNF44Q7L0R7 432 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 PARS2Q7L3T8 475 aaKnown RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TMEM135Q86UB9 458 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 MICU3Q86XE3 530 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 VSIG1Q86XK7 387 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 SPATA2LQ8IUW3 424 aaPredicted RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 CCDC117Q8IWD4 279 aaPredicted RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 SLC35F3Q8IY50 421 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D3Q8IZP1 549 aaPredicted RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 ARL10Q8N8L6 244 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 ZNF548Q8NEK5 533 aaPredicted RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 OR6B3Q8NGW1 331 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 C16orf52Q8NHV5 167 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 NCOA7Q8NI08 942 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 BRIX1Q8TDN6 353 aaKnown RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 THAP4Q8WY91 577 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 RILPL2Q969X0 211 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 DAZAP1Q96EP5 407 aaKnown RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 C14orf79Q96F83 325 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 RITA1Q96K30 269 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TSPAN18Q96SJ8 248 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 IL12RB2Q99665 862 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 FOXC2Q99958 501 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 FAM118BQ9BPY3 351 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 EFHD1Q9BUP0 239 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 FSD1LQ9BXM9 530 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TXLNGYQ9BZA5 131 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 NACA2Q9H009 215 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 CXXC4Q9H2H0 198 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 WDCPQ9H6R7 721 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 ZWILCHQ9H900 591 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 SEPSECSQ9HD40 501 aaKnown RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 KRT84Q9NSB2 600 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 ZBTB40Q9NUA8 1239 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 MRPS18AQ9NVS2 196 aaKnown RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D29Q9UFV1 150 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 FEZ2Q9UHY8 353 aaPredicted RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 GTF3C4Q9UKN8 822 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 MRPS18BQ9Y676 258 aaKnown RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 CUBNO60494 3623 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 MXRA5Q9NR99 2828 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TGP01266 2768 aa4.33□□□□□ -1.72
LINC00540-201ENST00000611481 NBEAL2Q6ZNJ1 2754 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 UNC13CQ8NB66 2214 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 FAM234BA2RU67 622 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 ZSCAN5CA6NGD5 496 aaPredicted RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 PRAMEF26H0Y7S4 382 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 H7C1Q1 480 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 K7ERI5 159 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 PIP5K1BO14986 540 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 AQP9O43315 295 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 TNFRSF6BO95407 300 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 HEXAP06865 529 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 NPSP0C0P6 89 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 ANXA13P27216 316 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 RBMXP38159 391 aaKnown RBP4.32□□□□□ -1.72
LINC00540-201ENST00000611481 PIK3CAP42336 1068 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 NAMPTP43490 491 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 CLCN2P51788 898 aa4.32□□□□□ -1.72
LINC00540-201ENST00000611481 ARFIP2P53365 341 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms