RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 TRA2AQ13595 282 aaKnown RBP eCLIP18.75■□□□□ 0.59
UPF1-209ENST00000600310 ARMC6Q6NXE6 501 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 ADGRD1Q6QNK2 874 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 UBE2R2Q712K3 238 aaPredicted RBP18.75■□□□□ 0.59
UPF1-209ENST00000600310 CCDC91Q7Z6B0 441 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 CMC1Q7Z7K0 106 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 ADGRF3Q8IZF5 1079 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 DLG3Q92796 817 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 CNTNAP3BQ96NU0 1288 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 SCNM1Q9BWG6 230 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 RAB11FIP5Q9BXF6 653 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 CNTNAP3Q9BZ76 1288 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 DERL2Q9GZP9 239 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 SPATA7Q9P0W8 599 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 CIDEBQ9UHD4 219 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 ADAMTS6Q9UKP5 1117 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 KLK13Q9UKR3 277 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 UNC13CQ8NB66 2214 aa18.75■□□□□ 0.59
UPF1-209ENST00000600310 TPRP12270 2363 aaKnown RBP18.74■□□□□ 0.59
UPF1-209ENST00000600310 COL27A1Q8IZC6 1860 aaPredicted RBP18.74■□□□□ 0.59
UPF1-209ENST00000600310 SHBGP04278 402 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 SLC35E2BP0CK96 405 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 CYP2A7P20853 494 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 MPSTP25325 297 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 SERPINB8P50452 374 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 PHF19Q5T6S3 580 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 LGSNQ5TDP6 509 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 IRGCQ6NXR0 463 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 RAPH1Q70E73 1250 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 MARCH9Q86YJ5 346 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 RAB42Q8N4Z0 105 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 MREGQ8N565 214 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 OR2L8Q8NGY9 312 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 HMGCLL1Q8TB92 370 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 MCOLN3Q8TDD5 553 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 DENND1AQ8TEH3 1009 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 ISL2Q96A47 359 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 UBXN10Q96LJ8 280 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 CCDC74BQ96LY2 380 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 IL17FQ96PD4 163 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 TGM7Q96PF1 710 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 CD180Q99467 661 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 PKP4Q99569 1192 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 STRADBQ9C0K7 418 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 PPCSQ9HAB8 311 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 PARVBQ9HBI1 364 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 SNX15Q9NRS6 342 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.74■□□□□ 0.59
UPF1-209ENST00000600310 LNPEPQ9UIQ6 1025 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 IKZF3Q9UKT9 509 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 PDE10AQ9Y233 779 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 NEUROG3Q9Y4Z2 214 aa18.74■□□□□ 0.59
UPF1-209ENST00000600310 KRT87PA6NCN2 255 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 C2orf74A8MZ97 194 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 TOX3O15405 576 aaPredicted RBP18.73■□□□□ 0.59
UPF1-209ENST00000600310 KRT37O76014 449 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 ALDOAP04075 364 aaKnown RBP18.73■□□□□ 0.59
UPF1-209ENST00000600310 C2P06681 752 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 CHRM5P08912 532 aaPredicted RBP18.73■□□□□ 0.59
UPF1-209ENST00000600310 SNRPAP09012 282 aaKnown RBP18.73■□□□□ 0.59
UPF1-209ENST00000600310 CCDC166P0CW27 439 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 ERGP11308 486 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 SPINK2P20155 84 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 HSD17B2P37059 387 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 PPP1CAP62136 330 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 SHC2P98077 582 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 ARHGAP19Q14CB8 494 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 CYP2A13Q16696 494 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 ANKS6Q68DC2 871 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 ARHGAP22Q7Z5H3 698 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 CNPY4Q8N129 248 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 LINC01555Q8NAE3 123 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 LIN37Q96GY3 246 aaPredicted RBP18.73■□□□□ 0.59
UPF1-209ENST00000600310 ACTR10Q9NZ32 417 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 SEMA5BQ9P283 1151 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 POMT2Q9UKY4 750 aa18.73■□□□□ 0.59
UPF1-209ENST00000600310 NOVA2Q9UNW9 492 aaKnown RBP18.73■□□□□ 0.59
UPF1-209ENST00000600310 A0A087X1B8 175 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 PIPSLA2A3N6 862 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 GSAPA4D1B5 854 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 HGSO14964 777 aaPredicted RBP18.72■□□□□ 0.59
UPF1-209ENST00000600310 SYF2O95926 243 aaKnown RBP18.72■□□□□ 0.59
UPF1-209ENST00000600310 ENO2P09104 434 aaPredicted RBP18.72■□□□□ 0.59
UPF1-209ENST00000600310 NUDT17P0C025 328 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 ANKRD34CP0C6C1 535 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 TYK2P29597 1187 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 SLC26A3P40879 764 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 MAGEA12P43365 314 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 KPNA2P52292 529 aaKnown RBP18.72■□□□□ 0.59
UPF1-209ENST00000600310 ATP6V0D1P61421 351 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 CSHL1Q14406 222 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 KIR2DS3Q14952 304 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 PHKG1Q16816 387 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 SNAP47Q5SQN1 464 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 SBSNQ6UWP8 590 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 FAM92BQ6ZTR7 304 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 PRSS42Q7Z5A4 293 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 MTBPQ96DY7 904 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 TRIM54Q9BYV2 358 aa18.72■□□□□ 0.59
UPF1-209ENST00000600310 SPHK1Q9NYA1 384 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms