RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SPESP1Q6UW49 350 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 CENPUQ71F23 418 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 OTOAQ7RTW8 1153 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 HOOK3Q86VS8 718 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 OR8K5Q8NH50 307 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 ZNF501Q96CX3 271 aaPredicted RBP14.62□□□□□ -0.07
TRIM28-205ENST00000595028 SIGLEC10Q96LC7 697 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 EFHD1Q9BUP0 239 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 TWSG1Q9GZX9 223 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 LATS2Q9NRM7 1088 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 VPS9D1Q9Y2B5 631 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 MAD1L1Q9Y6D9 718 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 RELNP78509 3460 aa14.62□□□□□ -0.07
TRIM28-205ENST00000595028 NOTCH2Q04721 2471 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 MT-ND3P03897 115 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 CHRM5P08912 532 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-205ENST00000595028 MSL3P1P0C860 447 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 PVRP15151 417 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 RAB28P51157 221 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 CYP4F2P78329 520 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 PLEKHS1Q5SXH7 462 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 IZUMO3Q5VZ72 239 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 TRIM73Q86UV7 250 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 KLHL7Q8IXQ5 586 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 CFAP61Q8NHU2 1237 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 FLVCR1-AS1Q8TAF5 88 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 GSDMBQ8TAX9 411 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 STARD8Q92502 1023 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 RUNDC3BQ96NL0 473 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 TRAPPC9Q96Q05 1148 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 MENTQ9BUN1 341 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 FANCEQ9HB96 536 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 INTS10Q9NVR2 710 aaKnown RBP14.61□□□□□ -0.07
TRIM28-205ENST00000595028 SPHK1Q9NYA1 384 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 CRYL1Q9Y2S2 319 aa14.61□□□□□ -0.07
TRIM28-205ENST00000595028 SEC16AO15027 2179 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 CPNE3O75131 537 aaKnown RBP14.6□□□□□ -0.07
TRIM28-205ENST00000595028 SCRG1O75711 98 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 PKMP14618 531 aaKnown RBP14.6□□□□□ -0.07
TRIM28-205ENST00000595028 PGAM1P18669 254 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 ATP5DP30049 168 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 PEBP1P30086 187 aaKnown RBP14.6□□□□□ -0.07
TRIM28-205ENST00000595028 SLC1A2P43004 574 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 DR1Q01658 176 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 ABRQ12979 859 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 THOC5Q13769 683 aaKnown RBP14.6□□□□□ -0.07
TRIM28-205ENST00000595028 GRB7Q14451 532 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 GBX1Q14549 363 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 KYNUQ16719 465 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 LONRF1Q17RB8 773 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 ZNF789Q5FWF6 425 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 SYDE1Q6ZW31 735 aaPredicted RBP14.6□□□□□ -0.07
TRIM28-205ENST00000595028 PCGF5Q86SE9 256 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 TMEM126BQ8IUX1 230 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 DENND6AQ8IWF6 608 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 LMNTD2Q8IXW0 634 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 C19orf47Q8N9M1 422 aaKnown RBP14.6□□□□□ -0.07
TRIM28-205ENST00000595028 EXTL1Q92935 676 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 FAM136AQ96C01 138 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 OR2A14Q96R47 310 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 KLHL25Q9H0H3 589 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 SYTL2Q9HCH5 934 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 KCND1Q9NSA2 647 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 ANKMY1Q9P2S6 941 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 CROTQ9UKG9 612 aa14.6□□□□□ -0.07
TRIM28-205ENST00000595028 RUVBL2Q9Y230 463 aaKnown RBP14.6□□□□□ -0.07
TRIM28-205ENST00000595028 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.6□□□□□ -0.07
TRIM28-205ENST00000595028 FER1L5A0AVI2 2057 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 A0A0J9YY10 115 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 TMEM150CB9EJG8 249 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 CCDC188H7C350 402 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 MAP3K7O43318 606 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 S1PR4O95977 384 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 F7P08709 466 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-205ENST00000595028 F8A1P23610 371 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 IVDP26440 423 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 DLSTP36957 453 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 BDKRB1P46663 353 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 CDC20Q12834 499 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 CRYMQ14894 314 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 KIR2DS3Q14952 304 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 SLC5A12Q1EHB4 618 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 LINC00303Q3SY05 128 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 CDHR3Q6ZTQ4 885 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 ZBTB2Q8N680 514 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 EXD3Q8N9H8 876 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 LINC01555Q8NAE3 123 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.59□□□□□ -0.073e-6■■■■■ 56.5
TRIM28-205ENST00000595028 CT55Q8WUE5 264 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 SKA2Q8WVK7 121 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-205ENST00000595028 FAM167BQ9BTA0 163 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 RAB11FIP5Q9BXF6 653 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 LHX9Q9NQ69 397 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 FBXO6Q9NRD1 293 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-205ENST00000595028 C20orf96Q9NUD7 363 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-205ENST00000595028 CIDEBQ9UHD4 219 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 MRFAP1Q9Y605 127 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 NFS1Q9Y697 457 aa14.59□□□□□ -0.07
TRIM28-205ENST00000595028 USP9YO00507 2555 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-205ENST00000595028 E5RI56 91 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms