RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 LRR1Q96L50 414 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 ABHD1Q96SE0 405 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 FNDC11Q9BVV2 318 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 TBC1D17Q9HA65 648 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 A4GALTQ9NPC4 353 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 SLC35C2Q9NQQ7 365 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.76□□□□□ -1.65
NUP88-213ENST00000576862 ECHDC1Q9NTX5 307 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 ZNF701Q9NV72 531 aaPredicted RBP4.76□□□□□ -1.65
NUP88-213ENST00000576862 C2orf42Q9NWW7 574 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 MRPL15Q9P015 296 aaKnown RBP4.76□□□□□ -1.65
NUP88-213ENST00000576862 CRNNQ9UBG3 495 aaPredicted RBP4.76□□□□□ -1.65
NUP88-213ENST00000576862 MTUS1Q9ULD2 1270 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 KIAA1107Q9UPP5 1409 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 ARHGEF12Q9NZN5 1544 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 DISP3Q9P2K9 1392 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 CCDC141Q6ZP82 1450 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 ANKRD50Q9ULJ7 1429 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 HYKKA2RU49 373 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 TMEM221A6NGB7 291 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 NTN3O00634 580 aaPredicted RBP4.75□□□□□ -1.65
NUP88-213ENST00000576862 TCERG1O14776 1098 aaKnown RBP4.75□□□□□ -1.65
NUP88-213ENST00000576862 ADAM20O43506 726 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 TPD52P55327 224 aaPredicted RBP4.75□□□□□ -1.65
NUP88-213ENST00000576862 CX3CL1P78423 397 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 P2RY6Q15077 328 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 SH2D5Q6ZV89 423 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 GET4Q7L5D6 327 aaPredicted RBP4.75□□□□□ -1.65
NUP88-213ENST00000576862 ADGRA1Q86SQ6 560 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 ZNF595Q8IYB9 648 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 OR13J1Q8NGT2 312 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 LMF2Q9BU23 707 aaKnown RBP4.75□□□□□ -1.65
NUP88-213ENST00000576862 GDE1Q9NZC3 331 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 RPS6KA6Q9UK32 745 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 ZHX1Q9UKY1 873 aaPredicted RBP4.75□□□□□ -1.65
NUP88-213ENST00000576862 ARHGAP5Q13017 1502 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 KIF15Q9NS87 1388 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 ZCCHC11Q5TAX3 1644 aaKnown RBP4.75□□□□□ -1.65
NUP88-213ENST00000576862 PZPP20742 1482 aa4.75□□□□□ -1.65
NUP88-213ENST00000576862 SAMD9LQ8IVG5 1584 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 TRAPPC8Q9Y2L5 1435 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 SYCP2Q9BX26 1530 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 GAPDHSO14556 408 aaPredicted RBP4.74□□□□□ -1.65
NUP88-213ENST00000576862 ERAL1O75616 437 aaKnown RBP4.74□□□□□ -1.65
NUP88-213ENST00000576862 WDPCPO95876 746 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 CLPTM1O96005 669 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 TSPY4P0CV99 314 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 TSPY10P0CW01 314 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 GJA1P17302 382 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 DNASE1P24855 282 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 CEACAM8P31997 349 aaPredicted RBP4.74□□□□□ -1.65
NUP88-213ENST00000576862 CDH13P55290 713 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 DMPKQ09013 629 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 RNASEH2BQ5TBB1 312 aaKnown RBP4.74□□□□□ -1.65
NUP88-213ENST00000576862 TMPRSS11FQ6ZWK6 438 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 KRT77Q7Z794 578 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 TMEM173Q86WV6 379 aaPredicted RBP4.74□□□□□ -1.65
NUP88-213ENST00000576862 DNAAF5Q86Y56 855 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 MAPKAPK5-AS1Q8N8E1 139 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 MCUQ8NE86 351 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 APPL2Q8NEU8 664 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 OR10S1Q8NGN2 331 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 TMEM143Q96AN5 459 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 MRPL1Q9BYD6 325 aaKnown RBP4.74□□□□□ -1.65
NUP88-213ENST00000576862 BARHL1Q9BZE3 327 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 ZNF71Q9NQZ8 489 aaPredicted RBP4.74□□□□□ -1.65
NUP88-213ENST00000576862 NOL7Q9UMY1 257 aaKnown RBP4.74□□□□□ -1.65
NUP88-213ENST00000576862 ANKRD30BQ9BXX2 1392 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 PLEKHH2Q8IVE3 1493 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 ARHGEF5Q12774 1597 aa4.74□□□□□ -1.65
NUP88-213ENST00000576862 STK36Q9NRP7 1315 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 PREX2Q70Z35 1606 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 A0A087X002 238 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 IGHV4-61A0A0C4DH41 118 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 K7ENM7 598 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 NR5A2O00482 541 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 PIGNO95427 931 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 CGAP01215 116 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 IGHV4-59P01825 116 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 HSP90AB1P08238 724 aaKnown RBP4.73□□□□□ -1.65
NUP88-213ENST00000576862 OR2T7P0C7T2 308 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 PLA2G4BP0C869 781 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 CEACAM1P13688 526 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 C14orf177Q52M58 125 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 COMMD2Q86X83 199 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 ARHGAP24Q8N264 748 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 PPFIBP2Q8ND30 876 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 MS4A10Q96PG2 267 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 GCNAQ96QF7 691 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 LAT2Q9GZY6 243 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 EQTNQ9NQ60 294 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 CHORDC1Q9UHD1 332 aaPredicted RBP4.73□□□□□ -1.65
NUP88-213ENST00000576862 FBXO2Q9UK22 296 aaPredicted RBP4.73□□□□□ -1.65
NUP88-213ENST00000576862 KCNK7Q9Y2U2 307 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 GRIP1Q9Y3R0 1128 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 NME7Q9Y5B8 376 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 ITSN2Q9NZM3 1697 aa4.73□□□□□ -1.65
NUP88-213ENST00000576862 PASKQ96RG2 1323 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 ARAP3Q8WWN8 1544 aa4.72□□□□□ -1.65
NUP88-213ENST00000576862 SMCHD1A6NHR9 2005 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms