RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 MYADMQ96S97 322 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 PNKPQ96T60 521 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 MGME1Q9BQP7 344 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 SYT15Q9BQS2 421 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 HEMGNQ9BXL5 484 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 FAM129AQ9BZQ8 928 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 ISCUQ9H1K1 167 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 MFSD1Q9H3U5 465 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 MMRN2Q9H8L6 949 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 CYP3A43Q9HB55 503 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 GPR35Q9HC97 309 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 ZFP14Q9HCL3 533 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 XPR1Q9UBH6 696 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 OSGIN2Q9Y236 505 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 DRG1Q9Y295 367 aaKnown RBP6.05□□□□□ -1.44
VPS53-212ENST00000572259 NEU2Q9Y3R4 380 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 PCDHGA5Q9Y5G8 931 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 PCDHGA1Q9Y5H4 931 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 TSC2P49815 1807 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 PTPRJQ12913 1337 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 PTPRDP23468 1912 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 GREB1Q4ZG55 1949 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 LOC100509620A0A075B734 347 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ARPC4-TTLL3A0A0A6YYG9 625 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 OR2A25A4D2G3 310 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 TMEM221A6NGB7 291 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 FAM90A7PA6NKC0 464 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 SLC38A8A6NNN8 435 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ENO4A6NNW6 628 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 FAM90A22PA8MWA6 464 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 FAM90A12PA8MX19 464 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 FAM90A23PA8MXZ1 464 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 TEX22C9J3V5 150 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 CCDC188H7C350 402 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 M0R296 226 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ANGPT2O15123 496 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 TRIM24O15164 1050 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 RRP9O43818 475 aaKnown RBP6.04□□□□□ -1.44
VPS53-212ENST00000572259 VEGFDO43915 354 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ECI2O75521 394 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 MBD3O95983 291 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ASS1P00966 412 aaKnown RBP6.04□□□□□ -1.44
VPS53-212ENST00000572259 PRR35P0CG20 571 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 KRT5P13647 590 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ACAT1P24752 427 aaKnown RBP6.04□□□□□ -1.44
VPS53-212ENST00000572259 LMO2P25791 158 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 GABRR2P28476 465 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 PPP3CCP48454 512 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 KHKP50053 298 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 GBX2P52951 348 aaPredicted RBP6.04□□□□□ -1.44
VPS53-212ENST00000572259 SLC8A3P57103 927 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 NOP14P78316 857 aaKnown RBP6.04□□□□□ -1.44
VPS53-212ENST00000572259 NTHL1P78549 312 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 PIGFQ07326 219 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ZNF844Q08AG5 666 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 RIPK1Q13546 671 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 MANEALQ5VSG8 457 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 HEPHL1Q6MZM0 1159 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 TMEM270Q6UE05 265 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 GDF7Q7Z4P5 450 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ADCK2Q7Z695 626 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 KBTBD6Q86V97 674 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 GAS2L3Q86XJ1 694 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 FAM114A1Q8IWE2 563 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 FBXW8Q8N3Y1 598 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 SLC44A3Q8N4M1 653 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 PTGR2Q8N8N7 351 aaPredicted RBP6.04□□□□□ -1.44
VPS53-212ENST00000572259 DRAXINQ8NBI3 349 aaPredicted RBP6.04□□□□□ -1.44
VPS53-212ENST00000572259 B3GALNT2Q8NCR0 500 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 OR56A1Q8NGH5 318 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 OR56B2PQ8NGI1 322 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ITFG1Q8TB96 612 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 MRPS31Q92665 395 aaKnown RBP6.04□□□□□ -1.44
VPS53-212ENST00000572259 SMARCD2Q92925 531 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ELSPBP1Q96BH3 223 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 FAM81BQ96LP2 452 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 GAL3ST4Q96RP7 486 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 PRRX2Q99811 253 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 RTP3Q9BQQ7 232 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 MED10Q9BTT4 135 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 SPATA5L1Q9BVQ7 753 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 CCDC106Q9BWC9 280 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ELOVL4Q9GZR5 314 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 CLSTN2Q9H4D0 955 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 TCF7L2Q9NQB0 619 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 RAB20Q9NX57 234 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 CHCHD3Q9NX63 227 aaKnown RBP6.04□□□□□ -1.44
VPS53-212ENST00000572259 WNT16Q9UBV4 365 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 RWDD2AQ9UIY3 292 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 PADI1Q9ULC6 663 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 CDYLQ9Y232 598 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 ADAM18Q9Y3Q7 739 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 NFS1Q9Y697 457 aa6.04□□□□□ -1.44
VPS53-212ENST00000572259 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.04□□□□□ -1.44
VPS53-212ENST00000572259 ANAPC1Q9H1A4 1944 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 A0A1B0GTW7 788 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 MYBPHLA2RUH7 354 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 TRIM49BA6NDI0 452 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 SLC9B1P1A6NJY1 282 aa6.03□□□□□ -1.44
VPS53-212ENST00000572259 ANHXE9PGG2 379 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms