RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 IGHV1OR21-1A0A087WYE8 117 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 NTN3O00634 580 aaPredicted RBP20.01■□□□□ 0.79
VPS53-210ENST00000571456 CATP04040 527 aaKnown RBP20.01■□□□□ 0.79
VPS53-210ENST00000571456 MYF5P13349 255 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 STMN1P16949 149 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 ALDH4A1P30038 563 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 SLC26A3P40879 764 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 CDKN2DP55273 166 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 SP140Q13342 867 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 SLC29A2Q14542 456 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 PLCL1Q15111 1095 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 COLEC12Q5KU26 742 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 WDR74Q6RFH5 385 aaPredicted RBP20.01■□□□□ 0.79
VPS53-210ENST00000571456 VRK3Q8IV63 474 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 GSPT2Q8IYD1 628 aaKnown RBP20.01■□□□□ 0.79
VPS53-210ENST00000571456 MYO1HQ8N1T3 1032 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 GIMAP7Q8NHV1 300 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 GFM1Q96RP9 751 aaKnown RBP20.01■□□□□ 0.79
VPS53-210ENST00000571456 PAFAH2Q99487 392 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.01■□□□□ 0.79
VPS53-210ENST00000571456 CLCA2Q9UQC9 943 aa20.01■□□□□ 0.79
VPS53-210ENST00000571456 V9GYY5 206 aaPredicted RBP20.01■□□□□ 0.79
VPS53-210ENST00000571456 TLN1Q9Y490 2541 aaKnown RBP20.01■□□□□ 0.79
VPS53-210ENST00000571456 SLC16A5O15375 505 aa20■□□□□ 0.79
VPS53-210ENST00000571456 PSIP1O75475 530 aaKnown RBP20■□□□□ 0.79
VPS53-210ENST00000571456 UBXN7O94888 489 aa20■□□□□ 0.79
VPS53-210ENST00000571456 RPLP0P05388 317 aaKnown RBP20■□□□□ 0.79
VPS53-210ENST00000571456 C8GP07360 202 aa20■□□□□ 0.79
VPS53-210ENST00000571456 ZNF37AP17032 561 aaPredicted RBP20■□□□□ 0.79
VPS53-210ENST00000571456 CRABP2P29373 138 aa20■□□□□ 0.79
VPS53-210ENST00000571456 SHMT2P34897 504 aa20■□□□□ 0.79
VPS53-210ENST00000571456 TAS2R39P59534 338 aa20■□□□□ 0.79
VPS53-210ENST00000571456 TIAL1Q01085 375 aaKnown RBP eCLIP20■□□□□ 0.79
VPS53-210ENST00000571456 USP10Q14694 798 aaKnown RBP20■□□□□ 0.79
VPS53-210ENST00000571456 ACSBG2Q5FVE4 666 aa20■□□□□ 0.79
VPS53-210ENST00000571456 PAQR3Q6TCH7 311 aa20■□□□□ 0.79
VPS53-210ENST00000571456 NAPRTQ6XQN6 538 aa20■□□□□ 0.79
VPS53-210ENST00000571456 RBM44Q6ZP01 1051 aaKnown RBP20■□□□□ 0.79
VPS53-210ENST00000571456 PIM3Q86V86 326 aa20■□□□□ 0.79
VPS53-210ENST00000571456 MREGQ8N565 214 aa20■□□□□ 0.79
VPS53-210ENST00000571456 DCBLD1Q8N8Z6 715 aa20■□□□□ 0.79
VPS53-210ENST00000571456 SNRNP27Q8WVK2 155 aaKnown RBP20■□□□□ 0.79
VPS53-210ENST00000571456 UBLCP1Q8WVY7 318 aaPredicted RBP20■□□□□ 0.79
VPS53-210ENST00000571456 FAM136AQ96C01 138 aa20■□□□□ 0.79
VPS53-210ENST00000571456 ATXN7L3BQ96GX2 97 aa20■□□□□ 0.79
VPS53-210ENST00000571456 ZNF578Q96N58 590 aaPredicted RBP20■□□□□ 0.79
VPS53-210ENST00000571456 GALPQ9UBC7 116 aa20■□□□□ 0.79
VPS53-210ENST00000571456 EPHA6Q9UF33 1036 aa20■□□□□ 0.79
VPS53-210ENST00000571456 CFAP20Q9Y6A4 193 aaKnown RBP20■□□□□ 0.79
VPS53-210ENST00000571456 CCDC189A1A4V9 331 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 B4GAT1O43505 415 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 ZBTB14O43829 449 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 ERLIN1O75477 346 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 F7P08709 466 aaPredicted RBP19.99■□□□□ 0.79
VPS53-210ENST00000571456 AMD1P17707 334 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 HSD17B2P37059 387 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 OR1D5P58170 312 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 RAB10P61026 200 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 ABRQ12979 859 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 ZKSCAN8Q15776 578 aaPredicted RBP19.99■□□□□ 0.79
VPS53-210ENST00000571456 CDCP2Q5VXM1 449 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 OOSP2Q86WS3 158 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 PLXDC1Q8IUK5 500 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 CPNE9Q8IYJ1 553 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 CARFQ8N187 725 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 LCN9Q8WX39 176 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 MTBPQ96DY7 904 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 TMEM74Q96NL1 305 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 DEPDC7Q96QD5 511 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 OLFM1Q99784 485 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 GPAMQ9HCL2 828 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 OR6C2Q9NZP2 312 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.99■□□□□ 0.79
VPS53-210ENST00000571456 SLC39A10Q9ULF5 831 aa19.99■□□□□ 0.79
VPS53-210ENST00000571456 MTO1Q9Y2Z2 717 aaKnown RBP19.99■□□□□ 0.79
VPS53-210ENST00000571456 TEP1Q99973 2627 aaKnown RBP19.99■□□□□ 0.79
VPS53-210ENST00000571456 ZNF839A8K0R7 811 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 D6RAR5 112 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 GFYI3L273 518 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 TOX3O15405 576 aaPredicted RBP19.98■□□□□ 0.79
VPS53-210ENST00000571456 PIAS1O75925 651 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 C1orf105O95561 183 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 MAP4P27816 1152 aaKnown RBP19.98■□□□□ 0.79
VPS53-210ENST00000571456 CD1CP29017 333 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 CAPZBP47756 277 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 CCL7P80098 99 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 INSM1Q01101 510 aaPredicted RBP19.98■□□□□ 0.79
VPS53-210ENST00000571456 VAC14Q08AM6 782 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 PRKAA1Q13131 559 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 TRA2AQ13595 282 aaKnown RBP eCLIP19.98■□□□□ 0.79
VPS53-210ENST00000571456 EFTUD2Q15029 972 aaKnown RBP eCLIP19.98■□□□□ 0.79
VPS53-210ENST00000571456 RASA2Q15283 850 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 UAP1Q16222 522 aaPredicted RBP19.98■□□□□ 0.79
VPS53-210ENST00000571456 Q8N9G6 341 aaPredicted RBP19.98■□□□□ 0.79
VPS53-210ENST00000571456 OR4D9Q8NGE8 314 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 OR52E1Q8NGJ3 308 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 OR5AR1Q8NGP9 310 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 ASB11Q8WXH4 323 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 CD180Q99467 661 aa19.98■□□□□ 0.79
VPS53-210ENST00000571456 SLC30A3Q99726 388 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms