RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PTGER3P43115 390 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 CARD16Q5EG05 197 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 FAM171A1Q5VUB5 890 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 GLB1LQ6UWU2 654 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 OR6K2Q8NGY2 324 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 RASSF1Q9NS23 344 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 OLA1Q9NTK5 396 aaKnown RBP12.92□□□□□ -0.34
CLN3-210ENST00000563874 DNMT3BQ9UBC3 853 aaKnown RBP12.92□□□□□ -0.34
CLN3-210ENST00000563874 ABCG2Q9UNQ0 655 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 DHRS7Q9Y394 339 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 PKP3Q9Y446 797 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 GBF1Q92538 1859 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 LOC730098B7Z3J9 87 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 RAD51BO15315 384 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 KDM1AO60341 852 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 GABARAPO95166 117 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 ALDH2P05091 517 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 GNPDA1P46926 289 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 TOP3AQ13472 1001 aaPredicted RBP12.92□□□□□ -0.34
CLN3-210ENST00000563874 CPSF6Q16630 551 aaKnown RBP eCLIP12.92□□□□□ -0.34
CLN3-210ENST00000563874 CACHD1Q5VU97 1274 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 GPR149Q86SP6 731 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 WDR12Q9GZL7 423 aaKnown RBP12.92□□□□□ -0.34
CLN3-210ENST00000563874 LRTM1Q9HBL6 345 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 TMEM45AQ9NWC5 275 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 RBMX2Q9Y388 322 aaKnown RBP12.92□□□□□ -0.34
CLN3-210ENST00000563874 ARIH1Q9Y4X5 557 aaPredicted RBP12.92□□□□□ -0.34
CLN3-210ENST00000563874 PCDHGA10Q9Y5H3 936 aa12.92□□□□□ -0.34
CLN3-210ENST00000563874 hCG_2039718K7EN88 272 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 IFRD1O00458 451 aaPredicted RBP12.91□□□□□ -0.34
CLN3-210ENST00000563874 PER2O15055 1255 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 CDKN2CP42773 168 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 MASP1P48740 699 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 CLCN4P51793 760 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 DUSP4Q13115 394 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 SLC14A1Q13336 389 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 CARTPTQ16568 116 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 INAVAQ3KP66 663 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 CLLU1OSQ5K130 101 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 ZDHHC21Q8IVQ6 265 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 CHPFQ8IZ52 775 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 TTC30BQ8N4P2 665 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 ULK4Q96C45 1275 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 TSSK3Q96PN8 268 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 ADGRE3Q9BY15 652 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 GPR63Q9BZJ6 419 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 P2RY12Q9H244 342 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 TRMT13Q9NUP7 481 aaKnown RBP12.91□□□□□ -0.34
CLN3-210ENST00000563874 OPTCQ9UBM4 332 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 DLGAP4Q9Y2H0 992 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 Q9Y3F1 56 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 NAALAD2Q9Y3Q0 740 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 PRSS21Q9Y6M0 314 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 HTTP42858 3142 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 A8MX80 341 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 AQP9O43315 295 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 ACSL4O60488 711 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 MT-ND2P03891 347 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 IL6P05231 212 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 RHOCP08134 193 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 BCKDHAP12694 445 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 GSSP48637 474 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 NEK2P51955 445 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 P2RY8Q86VZ1 359 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 PIK3C3Q8NEB9 887 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 TRIT1Q9H3H1 467 aaKnown RBP12.91□□□□□ -0.34
CLN3-210ENST00000563874 CLMPQ9H6B4 373 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 C1orf109Q9NX04 203 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 WDR37Q9Y2I8 494 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 LAMA3Q16787 3333 aa12.91□□□□□ -0.34
CLN3-210ENST00000563874 H3BNC9 293 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 KDELR3O43731 214 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 GJB5O95377 273 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 CCDC159P0C7I6 412 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 CATSPEREQ5SY80 951 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 ATXN7L2Q5T6C5 722 aaPredicted RBP12.9□□□□□ -0.34
CLN3-210ENST00000563874 CPZQ66K79 652 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 RSPO2Q6UXX9 243 aaPredicted RBP12.9□□□□□ -0.34
CLN3-210ENST00000563874 RNF19BQ6ZMZ0 732 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 MFSD4AQ8N468 514 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 ZNF540Q8NDQ6 660 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 BHMTQ93088 406 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 PYURFQ96I23 114 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 CLPBQ9H078 707 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 SPC25Q9HBM1 224 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 GKN1Q9NS71 199 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 GIN1Q9NXP7 522 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 IL37Q9NZH6 218 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 SLC16A6O15403 523 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 CNOT3O75175 753 aaKnown RBP12.9□□□□□ -0.34
CLN3-210ENST00000563874 DUSP11O75319 330 aaKnown RBP12.9□□□□□ -0.34
CLN3-210ENST00000563874 SLC25A14O95258 325 aaPredicted RBP12.9□□□□□ -0.34
CLN3-210ENST00000563874 F11P03951 625 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 IRF1P10914 325 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 TACR1P25103 407 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 RYKP34925 604 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 NRIP1P48552 1158 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 CLK3P49761 638 aaKnown RBP12.9□□□□□ -0.34
CLN3-210ENST00000563874 DAPP51397 102 aa12.9□□□□□ -0.34
CLN3-210ENST00000563874 RPS3AP61247 264 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms