RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 PGRMC1O00264 195 aaKnown RBP16.27■□□□□ 0.2
CLK3-210ENST00000563112 SUV39H1O43463 412 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 RAB40ALP0C0E4 278 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 PKLRP30613 574 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 COILP38432 576 aaPredicted RBP16.27■□□□□ 0.2
CLK3-210ENST00000563112 MAGEA6P43360 314 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 KYNUQ16719 465 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 UGT8Q16880 541 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 PRAMEF17Q5VTA0 474 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 IZUMO3Q5VZ72 239 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 KIAA0930Q6ICG6 404 aaPredicted RBP16.27■□□□□ 0.2
CLK3-210ENST00000563112 TTC27Q6P3X3 843 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 CCDC137Q6PK04 289 aaKnown RBP16.27■□□□□ 0.2
CLK3-210ENST00000563112 ZNF517Q6ZMY9 492 aaPredicted RBP16.27■□□□□ 0.2
CLK3-210ENST00000563112 PTRH1Q86Y79 214 aaKnown RBP16.27■□□□□ 0.2
CLK3-210ENST00000563112 VRK3Q8IV63 474 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 DSELQ8IZU8 1212 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 SLC38A9Q8NBW4 561 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 SKA2Q8WVK7 121 aaPredicted RBP16.27■□□□□ 0.2
CLK3-210ENST00000563112 THAP4Q8WY91 577 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 SLC22A18Q96BI1 424 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 MS4A14Q96JA4 679 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 FOPNLQ96NB1 174 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 DPH2Q9BQC3 489 aaPredicted RBP16.27■□□□□ 0.2
CLK3-210ENST00000563112 CHRNA10Q9GZZ6 450 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 XAB2Q9HCS7 855 aaKnown RBP16.27■□□□□ 0.2
CLK3-210ENST00000563112 ZNF71Q9NQZ8 489 aaPredicted RBP16.27■□□□□ 0.2
CLK3-210ENST00000563112 SLC39A10Q9ULF5 831 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 AP1M2Q9Y6Q5 423 aa16.27■□□□□ 0.2
CLK3-210ENST00000563112 GOLGA6L10A0A0M3HER8 536 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 SDR42E2A6NKP2 422 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 ZNF749O43361 778 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 RFPL1O75677 317 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 OR2B3O76000 313 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 FURINP09958 794 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 MLNP12872 115 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 AGXTP21549 392 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 CD9P21926 228 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 FMO4P31512 558 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 RPS18P62269 152 aaKnown RBP16.26■□□□□ 0.19
CLK3-210ENST00000563112 LACTB2Q53H82 288 aaPredicted RBP16.26■□□□□ 0.19
CLK3-210ENST00000563112 SYTL1Q8IYJ3 562 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 RAB42Q8N4Z0 105 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 GRK7Q8WTQ7 553 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 RAD51AP1Q96B01 352 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 RUFY1Q96T51 708 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 RAB11FIP5Q9BXF6 653 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 PCMTD2Q9NV79 361 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 IRAK4Q9NWZ3 460 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.26■□□□□ 0.19
CLK3-210ENST00000563112 SNX7Q9UNH6 387 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 VPS9D1Q9Y2B5 631 aa16.26■□□□□ 0.19
CLK3-210ENST00000563112 FLNBO75369 2602 aaKnown RBP16.25■□□□□ 0.19
CLK3-210ENST00000563112 GOLGA8KD6RF30 607 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 GOLGA8TH3BQL2 631 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 KIF5CO60282 957 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 AVILO75366 819 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 ESR1P03372 595 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 OGNP20774 298 aaKnown RBP16.25■□□□□ 0.19
CLK3-210ENST00000563112 RORAP35398 523 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 PMS2P54278 862 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 CYP1B1Q16678 543 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 KCTD19Q17RG1 926 aaPredicted RBP16.25■□□□□ 0.19
CLK3-210ENST00000563112 TYSND1Q2T9J0 566 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 ZNF789Q5FWF6 425 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 TMEM135Q86UB9 458 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 REXO1L1PQ8IX06 675 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 SLC35F6Q8N357 371 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 ENDOVQ8N8Q3 282 aaKnown RBP16.25■□□□□ 0.19
CLK3-210ENST00000563112 MCUQ8NE86 351 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 OR2L8Q8NGY9 312 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 FLVCR1-AS1Q8TAF5 88 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 MAGEC3Q8TD91 643 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 C17orf62Q9BQA9 187 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 NLNQ9BYT8 704 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 FAM60AQ9NP50 221 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 INTS7Q9NVH2 962 aaKnown RBP16.25■□□□□ 0.19
CLK3-210ENST00000563112 ANAPC2Q9UJX6 822 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 PLCL2Q9UPR0 1127 aa16.25■□□□□ 0.19
CLK3-210ENST00000563112 FAM237BA0A1B0GVD1 139 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 C9J4A7 227 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 RASGRF2O14827 1237 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 WISP1O95388 367 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 S1PR4O95977 384 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 CHRM3P20309 590 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 ARNTP27540 789 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 CCNFP41002 786 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 KCNC4Q03721 635 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 THOC5Q13769 683 aaKnown RBP16.24■□□□□ 0.19
CLK3-210ENST00000563112 DHX34Q14147 1143 aaKnown RBP16.24■□□□□ 0.19
CLK3-210ENST00000563112 ZIC1Q15915 447 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 PTCHD3Q3KNS1 767 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 CTSL3PQ5NE16 218 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 ANKRD22Q5VYY1 191 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 NEPROQ6NW34 567 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 TLDC1Q6P9B6 456 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 CAND1Q86VP6 1230 aaKnown RBP16.24■□□□□ 0.19
CLK3-210ENST00000563112 APLFQ8IW19 511 aaPredicted RBP16.24■□□□□ 0.19
CLK3-210ENST00000563112 ACTRT1Q8TDG2 376 aa16.24■□□□□ 0.19
CLK3-210ENST00000563112 LPGAT1Q92604 370 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms