RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 SLC26A1Q9H2B4 701 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 ZBTB20Q9HC78 741 aaPredicted RBP15.83■□□□□ 0.12
CLN3-208ENST00000561505 ATP13A2Q9NQ11 1180 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 PLCL2Q9UPR0 1127 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 CDYLQ9Y232 598 aa15.83■□□□□ 0.12
CLN3-208ENST00000561505 CCDC88CQ9P219 2028 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 MROH6A6NGR9 719 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 CCL22O00626 93 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 ALBP02768 609 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 PRSS56P0CW18 603 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 MMP11P24347 488 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 PEBP1P30086 187 aaKnown RBP15.82■□□□□ 0.12
CLN3-208ENST00000561505 EIF3EP60228 445 aaKnown RBP15.82■□□□□ 0.12
CLN3-208ENST00000561505 CACNG1Q06432 222 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 KIR2DS3Q14952 304 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 MICALCLQ6ZW33 695 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 TRIM73Q86UV7 250 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 ZADH2Q8N4Q0 377 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 CCDC110Q8TBZ0 833 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 PPP4R1Q8TF05 950 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 COG1Q8WTW3 980 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 STYXQ8WUJ0 223 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 CALR3Q96L12 384 aaKnown RBP15.82■□□□□ 0.12
CLN3-208ENST00000561505 ZNF285Q96NJ3 590 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 OSBPL8Q9BZF1 889 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 WDR54Q9H977 334 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 IFT80Q9P2H3 777 aaPredicted RBP15.82■□□□□ 0.12
CLN3-208ENST00000561505 DHCR7Q9UBM7 475 aaKnown RBP15.82■□□□□ 0.12
CLN3-208ENST00000561505 PRSS21Q9Y6M0 314 aa15.82■□□□□ 0.12
CLN3-208ENST00000561505 AKR1B15C9JRZ8 316 aaPredicted RBP15.81■□□□□ 0.12
CLN3-208ENST00000561505 KCNN4O15554 427 aa15.81■□□□□ 0.12
CLN3-208ENST00000561505 STK10O94804 968 aaKnown RBP15.81■□□□□ 0.12
CLN3-208ENST00000561505 AIMP2Q13155 320 aaKnown RBP15.81■□□□□ 0.12
CLN3-208ENST00000561505 PARP6Q2NL67 630 aa15.81■□□□□ 0.12
CLN3-208ENST00000561505 C1orf189Q5VU69 101 aa15.81■□□□□ 0.12
CLN3-208ENST00000561505 OVCH1Q7RTY7 1134 aa15.81■□□□□ 0.12
CLN3-208ENST00000561505 KCNMB4Q86W47 210 aa15.81■□□□□ 0.12
CLN3-208ENST00000561505 TMTC1Q8IUR5 882 aa15.81■□□□□ 0.12
CLN3-208ENST00000561505 SLC34A3Q8N130 599 aa15.81■□□□□ 0.12
CLN3-208ENST00000561505 LUC7LQ9NQ29 371 aaKnown RBP15.81■□□□□ 0.12
CLN3-208ENST00000561505 GPN3Q9UHW5 284 aaPredicted RBP15.81■□□□□ 0.12
CLN3-208ENST00000561505 ASF1AQ9Y294 204 aa15.81■□□□□ 0.12
CLN3-208ENST00000561505 NUP210LQ5VU65 1888 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 MASP2O00187 686 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 E2F3O00716 465 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 SOCS6O14544 535 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 CTNNA2P26232 953 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 FOXN2P32314 431 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 TSFMP43897 325 aaKnown RBP15.8■□□□□ 0.12
CLN3-208ENST00000561505 SPARCL1Q14515 664 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 KYNUQ16719 465 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 DEFB110Q30KQ9 67 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 YOD1Q5VVQ6 348 aaPredicted RBP15.8■□□□□ 0.12
CLN3-208ENST00000561505 CCDC170Q8IYT3 715 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 ZNF655Q8N720 491 aaPredicted RBP15.8■□□□□ 0.12
CLN3-208ENST00000561505 TC2NQ8N9U0 490 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 SPSB2Q99619 263 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 WDR77Q9BQA1 342 aaPredicted RBP15.8■□□□□ 0.12
CLN3-208ENST00000561505 ILKAPQ9H0C8 392 aaPredicted RBP15.8■□□□□ 0.12
CLN3-208ENST00000561505 EURLQ9NYK6 297 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 NDOR1Q9UHB4 597 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 PCDHA13Q9Y5I0 950 aa15.8■□□□□ 0.12
CLN3-208ENST00000561505 FTH1P02794 183 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 PKLRP30613 574 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 ARSFP54793 590 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 FOXL2P58012 376 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 GRB7Q14451 532 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 PRAMEF13Q5VWM6 474 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 C1QL3Q5VWW1 255 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 B3GNTL1Q67FW5 361 aaPredicted RBP15.79■□□□□ 0.12
CLN3-208ENST00000561505 DARS2Q6PI48 645 aaKnown RBP15.79■□□□□ 0.12
CLN3-208ENST00000561505 TAS2R42Q7RTR8 314 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 HOOK3Q86VS8 718 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 LINC01555Q8NAE3 123 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 DENND1AQ8TEH3 1009 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 DLG3Q92796 817 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 N4BP2L2Q92802 583 aaPredicted RBP15.79■□□□□ 0.12
CLN3-208ENST00000561505 NDC1Q9BTX1 674 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 LRRC40Q9H9A6 602 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 SLC6A20Q9NP91 592 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 AGPAT4Q9NRZ5 378 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 TXLNGQ9NUQ3 528 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 SMARCAL1Q9NZC9 954 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 RIMKLBQ9ULI2 386 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 TFR2Q9UP52 801 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 KLK4Q9Y5K2 254 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 CSAG2Q9Y5P2 127 aa15.79■□□□□ 0.12
CLN3-208ENST00000561505 APCP25054 2843 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 DOCK10Q96BY6 2186 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 FITM1A5D6W6 292 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 VSTM2BA6NLU5 285 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 BTNL10A8MVZ5 291 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 PRICKLE3O43900 615 aaPredicted RBP15.78■□□□□ 0.12
CLN3-208ENST00000561505 GPC4O75487 556 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 SNRNP200O75643 2136 aaKnown RBP15.78■□□□□ 0.12
CLN3-208ENST00000561505 METTL18O95568 372 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 ACVR1Q04771 509 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 NKG7Q16617 165 aa15.78■□□□□ 0.12
CLN3-208ENST00000561505 DNAJC21Q5F1R6 531 aaKnown RBP15.78■□□□□ 0.12
CLN3-208ENST00000561505 RPUSD3Q6P087 351 aaKnown RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms