RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 LMNTD1Q8N9Z9 388 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 GALNT11Q8NCW6 608 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 OR13J1Q8NGT2 312 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 N4BP2L2Q92802 583 aaPredicted RBP11.23□□□□□ -0.61
USP3-220ENST00000561381 HDAC10Q969S8 669 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 TCTN2Q96GX1 697 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 MRFAP1L1Q96HT8 127 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 ALS2CR12Q96Q35 445 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 DESI2Q9BSY9 194 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 RBSNQ9H1K0 784 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 DHCR7Q9UBM7 475 aaKnown RBP11.23□□□□□ -0.61
USP3-220ENST00000561381 KLHL20Q9Y2M5 609 aa11.23□□□□□ -0.61
USP3-220ENST00000561381 CNOT3O75175 753 aaKnown RBP11.22□□□□□ -0.61
USP3-220ENST00000561381 SEMA7AO75326 666 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 AGFG2O95081 481 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 GOT2P00505 430 aaKnown RBP11.22□□□□□ -0.61
USP3-220ENST00000561381 FTH1P02794 183 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 AGXTP21549 392 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 SPTBN1Q01082 2364 aaKnown RBP11.22□□□□□ -0.61
USP3-220ENST00000561381 SPTAN1Q13813 2472 aaKnown RBP11.22□□□□□ -0.61
USP3-220ENST00000561381 SEMA3AQ14563 771 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 SYTL3Q4VX76 610 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 SLC6A19Q695T7 634 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 PACS1Q6VY07 963 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 MED25Q71SY5 747 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 MRGPREQ86SM8 312 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 TMEM139Q8IV31 216 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 VRK3Q8IV63 474 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 TBC1D21Q8IYX1 336 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 GPR135Q8IZ08 494 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 ZNF655Q8N720 491 aaPredicted RBP11.22□□□□□ -0.61
USP3-220ENST00000561381 UBL4BQ8N7F7 174 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 GLIS1Q8NBF1 620 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 OR5K2Q8NHB8 316 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 LKAAEAR1Q8TD35 194 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.22□□□□□ -0.61
USP3-220ENST00000561381 ZNF778Q96MU6 729 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 GBP5Q96PP8 586 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 DPH2Q9BQC3 489 aaPredicted RBP11.22□□□□□ -0.61
USP3-220ENST00000561381 ETNK1Q9HBU6 452 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 LRRC4CQ9HCJ2 640 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 GPR83Q9NYM4 423 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 OR6C2Q9NZP2 312 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 CIDEBQ9UHD4 219 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 CDYLQ9Y232 598 aa11.22□□□□□ -0.61
USP3-220ENST00000561381 A0A0J9YY10 115 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 IQCF5A8MTL0 148 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 MIF4GDA9UHW6 222 aaKnown RBP11.21□□□□□ -0.61
USP3-220ENST00000561381 ISM1B1AKI9 464 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 TCP11X1B4DZS4 312 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 ZSCAN9O15535 394 aaPredicted RBP11.21□□□□□ -0.61
USP3-220ENST00000561381 PSMD3O43242 534 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 DPM1O60762 260 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 ZNF189O75820 626 aaPredicted RBP11.21□□□□□ -0.61
USP3-220ENST00000561381 HBQ1P09105 142 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 ETS1P14921 441 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 CCR7P32248 378 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 RRADP55042 308 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 MRPL49Q13405 166 aaKnown RBP11.21□□□□□ -0.61
USP3-220ENST00000561381 KYNUQ16719 465 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 TSTD2Q5T7W7 516 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 FHL5Q5TD97 284 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 RHBDD2Q6NTF9 364 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 ZNF534Q76KX8 674 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 LINC00523Q86TU6 105 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 LDB1Q86U70 411 aaPredicted RBP11.21□□□□□ -0.61
USP3-220ENST00000561381 RAB43Q86YS6 212 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 DNAJC22Q8N4W6 341 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 C2orf73Q8N5S3 287 aaPredicted RBP11.21□□□□□ -0.61
USP3-220ENST00000561381 DNAAF3Q8N9W5 541 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 C19orf60Q96EN9 201 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 SGSM3Q96HU1 749 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 HES6Q96HZ4 224 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 SMAD5Q99717 465 aaKnown RBP11.21□□□□□ -0.61
USP3-220ENST00000561381 BAG1Q99933 345 aaPredicted RBP11.21□□□□□ -0.61
USP3-220ENST00000561381 DHRS4Q9BTZ2 278 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 SLAMF7Q9NQ25 335 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 IFT80Q9P2H3 777 aaPredicted RBP11.21□□□□□ -0.61
USP3-220ENST00000561381 POLG2Q9UHN1 485 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 PADI2Q9Y2J8 665 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 PTRH2Q9Y3E5 179 aaKnown RBP11.21□□□□□ -0.61
USP3-220ENST00000561381 PCDHGB7Q9Y5F8 929 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 CAPN6Q9Y6Q1 641 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 AP1M2Q9Y6Q5 423 aa11.21□□□□□ -0.61
USP3-220ENST00000561381 ANKRD12Q6UB98 2062 aa11.21□□□□□ -0.62
USP3-220ENST00000561381 QSOX1O00391 747 aa11.2□□□□□ -0.62
USP3-220ENST00000561381 LIASO43766 372 aa11.2□□□□□ -0.62
USP3-220ENST00000561381 KRT86O43790 486 aa11.2□□□□□ -0.62
USP3-220ENST00000561381 IFNB1P01574 187 aa11.2□□□□□ -0.62
USP3-220ENST00000561381 OR56A5P0C7T3 313 aa11.2□□□□□ -0.62
USP3-220ENST00000561381 PKLRP30613 574 aa11.2□□□□□ -0.62
USP3-220ENST00000561381 DCDP81605 110 aaKnown RBP11.2□□□□□ -0.62
USP3-220ENST00000561381 HSPA14Q0VDF9 509 aa11.2□□□□□ -0.62
USP3-220ENST00000561381 CDH17Q12864 832 aa11.2□□□□□ -0.62
USP3-220ENST00000561381 SSPNQ14714 243 aa11.2□□□□□ -0.62
USP3-220ENST00000561381 OASLQ15646 514 aaKnown RBP11.2□□□□□ -0.62
USP3-220ENST00000561381 SLC5A12Q1EHB4 618 aa11.2□□□□□ -0.62
USP3-220ENST00000561381 EIF2S3LQ2VIR3 472 aaKnown RBP11.2□□□□□ -0.62
USP3-220ENST00000561381 PLEKHN1Q494U1 663 aaPredicted RBP11.2□□□□□ -0.62
USP3-220ENST00000561381 NKAIN1Q4KMZ8 207 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms