RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	TCFL5	Q9UL49	500 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	PLCL2	Q9UPR0	1127 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	TP53TG5	Q9Y2B4	290 aa		13.61	□□□□□ -0.23
TPM1-223	ENST00000560445	TENM4	Q6N022	2769 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	BHMG1	C9JSJ3	638 aa	Predicted RBP	13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	ZSCAN9	O15535	394 aa	Predicted RBP	13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	PKLR	P30613	574 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	ARSF	P54793	590 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	ABR	Q12979	859 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	YOD1	Q5VVQ6	348 aa	Predicted RBP	13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	FBXO38	Q6PIJ6	1188 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	CDHR3	Q6ZTQ4	885 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	ENDOV	Q8N8Q3	282 aa	Known RBP	13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	SKA2	Q8WVK7	121 aa	Predicted RBP	13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	RAD51AP1	Q96B01	352 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	OR2A14	Q96R47	310 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	SLC25A23	Q9BV35	468 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	TRIM4	Q9C037	500 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	PCMTD2	Q9NV79	361 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	SLC2A6	Q9UGQ3	507 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	NDOR1	Q9UHB4	597 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	TLK1	Q9UKI8	766 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	ZNF451	Q9Y4E5	1061 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	PRSS21	Q9Y6M0	314 aa		13.6	□□□□□ -0.23
TPM1-223	ENST00000560445	GOLGA6L10	A0A0M3HER8	536 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	MAGEB16	A2A368	324 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	PEX12	O00623	359 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	ZNF749	O43361	778 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	OR1I1	O60431	355 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	GPC4	O75487	556 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	SLCO2B1	O94956	709 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	ESR1	P03372	595 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	ATXN8OS	P0DMR3	200 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	AOAH	P28039	575 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	ATP5D	P30049	168 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	CCR7	P32248	378 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	DCD	P81605	110 aa	Known RBP	13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	KYNU	Q16719	465 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	TTLL9	Q3SXZ7	439 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	TCTE1	Q5JU00	501 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	RHBDD2	Q6NTF9	364 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	LRRC8B	Q6P9F7	803 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	FAM199X	Q6PEV8	388 aa	Predicted RBP	13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	ZNF534	Q76KX8	674 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	PIP4P2	Q8N4L2	257 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	OR2L8	Q8NGY9	312 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	NACC2	Q96BF6	587 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	PBK	Q96KB5	322 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	FER1L6-AS2	Q96M78	137 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	KIFC1	Q9BW19	673 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	ING2	Q9H160	280 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	EPN3	Q9H201	632 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	XAB2	Q9HCS7	855 aa	Known RBP	13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	CHRAC1	Q9NRG0	131 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	FAM114A2	Q9NRY5	505 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	TREX1	Q9NSU2	369 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	JRKL	Q9Y4A0	524 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	FAM169A	Q9Y6X4	670 aa		13.59	□□□□□ -0.23
TPM1-223	ENST00000560445	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	ZNF839	A8K0R7	811 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	RASGRF2	O14827	1237 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	TMEM63A	O94886	807 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	ALPP	P05187	535 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	MLN	P12872	115 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	ETS1	P14921	441 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	PVR	P15151	417 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	OGN	P20774	298 aa	Known RBP	13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	CD9	P21926	228 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	FOLR3	P41439	243 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	GRIA1	P42261	906 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	ADAR	P55265	1226 aa	Known RBP	13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	EIF3B	P55884	814 aa	Known RBP	13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	SIX1	Q15475	284 aa	Predicted RBP	13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	ZNF789	Q5FWF6	425 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	CASC4	Q6P4E1	433 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	LMNTD2	Q8IXW0	634 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	EFCAB3	Q8N7B9	438 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	GRK7	Q8WTQ7	553 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	PPM1M	Q96MI6	270 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	UTP6	Q9NYH9	597 aa	Known RBP	13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	IL1RAPL1	Q9NZN1	696 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	SPATA7	Q9P0W8	599 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	IFT80	Q9P2H3	777 aa	Predicted RBP	13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	SOX13	Q9UN79	622 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	PPP2R2C	Q9Y2T4	447 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	UBR5	O95071	2799 aa	Predicted RBP	13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	SEC16A	O15027	2179 aa		13.58	□□□□□ -0.24
TPM1-223	ENST00000560445	ARGFX	A6NJG6	315 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	TARM1	B6A8C7	271 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445		E5RI56	91 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	DPM1	O60762	260 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	PHF2	O75151	1096 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	VAPB	O95292	243 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	FURIN	P09958	794 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	ZSCAN5DP	P0CG00	497 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	ITGAX	P20702	1163 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	HSD17B2	P37059	387 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	CSE1L	P55060	971 aa	Known RBP	13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	RPS18	P62269	152 aa	Known RBP	13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms