RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 FAM120BQ96EK7 910 aaKnown RBP12.08□□□□□ -0.48
LDLR-205ENST00000557933 MROQ9BYG7 248 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 SCUBE2Q9NQ36 999 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 LATS2Q9NRM7 1088 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 C14orf119Q9NWQ9 140 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 ELOVL2Q9NXB9 296 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 GPRC5BQ9NZH0 403 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 PADI3Q9ULW8 664 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 ATP11BQ9Y2G3 1177 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 SZT2Q5T011 3432 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 CREG1O75629 220 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 ZNF865P0CJ78 1059 aaPredicted RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 CD36P16671 472 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 RHOQP17081 205 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 CLK1P49759 484 aaKnown RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 ADAM17P78536 824 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 PWP1Q13610 501 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 ARHGEF7Q14155 803 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 CLCA4Q14CN2 919 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 LRRC73Q5JTD7 316 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 ATG16L2Q8NAA4 619 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 CAPNS2Q96L46 248 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 TUBA1CQ9BQE3 449 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 CIPCQ9C0C6 399 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 CRISPLD1Q9H336 500 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 SEPT3Q9UH03 358 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 NTRK1P04629 796 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 POU2F1P14859 743 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 ALOX12P18054 663 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 CLK3P49761 638 aaKnown RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 CCL23P55773 120 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 RPS3AP61247 264 aaKnown RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 DDX39BQ13838 428 aaKnown RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 CCDC92Q53HC0 331 aaPredicted RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 NEK10Q6ZWH5 1172 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 GATAD2AQ86YP4 633 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 NACA2Q9H009 215 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 PRDM5Q9NQX1 630 aaPredicted RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 GKN1Q9NS71 199 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 MRGBPQ9NV56 204 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 IL37Q9NZH6 218 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 PDP1Q9P0J1 537 aaPredicted RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 ZNF490Q9ULM2 529 aaPredicted RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 PCDHB9Q9Y5E1 797 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 GMPPBQ9Y5P6 360 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 TRIM64BA6NI03 449 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 ANKRD28O15084 1053 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 STX7O15400 261 aaKnown RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 TGM1P22735 817 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 SLC6A4P31645 630 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 DAPP51397 102 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 FOXM1Q08050 763 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 GBX1Q14549 363 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 RBM48Q5RL73 367 aaKnown RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 PLEKHG7Q6ZR37 379 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 ZDHHC21Q8IVQ6 265 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 RGL4Q8IZJ4 473 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 CELF2-AS1Q8N7Q2 184 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 TERB1Q8NA31 727 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 ZNF784Q8NCA9 323 aaPredicted RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 MCFD2Q8NI22 146 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 LGALS12Q96DT0 336 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 ZHX1-C8orf76Q96EF9 292 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 DMRTB1Q96MA1 342 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 CINPQ9BW66 212 aaPredicted RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 SIRT5Q9NXA8 310 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 C3orf18Q9UK00 162 aa12.07□□□□□ -0.48
LDLR-205ENST00000557933 EIF3LQ9Y262 564 aaKnown RBP12.07□□□□□ -0.48
LDLR-205ENST00000557933 LOC730098B7Z3J9 87 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 OPN1SWP03999 348 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 FGF1P05230 155 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 CHRM5P08912 532 aaPredicted RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 LIPAP38571 399 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 CREMQ03060 361 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 ZNF33AQ06730 810 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 UBE2UQ5VVX9 321 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 ZCCHC8Q6NZY4 707 aaKnown RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 DOK6Q6PKX4 331 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 CCDC71Q8IV32 467 aaPredicted RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 FAM217AQ8IXS0 508 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 UBE2J2Q8N2K1 259 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 MAL2Q969L2 176 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 KCNC2Q96PR1 638 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 ASB2Q96Q27 587 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 RBM4BQ9BQ04 359 aaKnown RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 RBM4Q9BWF3 364 aaKnown RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 UGT2B28Q9BY64 529 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 ZIM2Q9NZV7 527 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 KIF17Q9P2E2 1029 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 SLC6A14Q9UN76 642 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 PRSS21Q9Y6M0 314 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 ZFP37Q9Y6Q3 630 aaPredicted RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 SMIM30A4D0T7 59 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 TTC36A6NLP5 189 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 AP3D1O14617 1153 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 TNPO2O14787 897 aaKnown RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 PRLP01236 227 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 ZNF24P17028 368 aa12.06□□□□□ -0.48
LDLR-205ENST00000557933 JUNBP17275 347 aaPredicted RBP12.06□□□□□ -0.48
LDLR-205ENST00000557933 CD40LGP29965 261 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms