RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 AGAP7PQ5VUJ5 663 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 PRAMEF13Q5VWM6 474 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 ZDHHC20Q5W0Z9 365 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 NPNTQ6UXI9 565 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 BNC2Q6ZN30 1099 aaPredicted RBP10.11□□□□□ -0.79
VPS29-208ENST00000550267 TRIM73Q86UV7 250 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 SLC25A41Q8N5S1 370 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 PLD5Q8N7P1 536 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 C19orf47Q8N9M1 422 aaKnown RBP10.11□□□□□ -0.79
VPS29-208ENST00000550267 CATSPER1Q8NEC5 780 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 OR52E1Q8NGJ3 308 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 PROKR1Q8TCW9 393 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 COG1Q8WTW3 980 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 RAPGEF5Q92565 580 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 RBM41Q96IZ5 413 aaKnown RBP10.11□□□□□ -0.79
VPS29-208ENST00000550267 AGAP4Q96P64 663 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 AP1M1Q9BXS5 423 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 TRIM8Q9BZR9 551 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 TRABDQ9H4I3 376 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 XKR8Q9H6D3 395 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 TXLNGQ9NUQ3 528 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 SMOXQ9NWM0 555 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 ACTR10Q9NZ32 417 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.11□□□□□ -0.79
VPS29-208ENST00000550267 HEBP2Q9Y5Z4 205 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 AP1M2Q9Y6Q5 423 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 ADGRG4Q8IZF6 3080 aa10.11□□□□□ -0.79
VPS29-208ENST00000550267 PIKFYVEQ9Y2I7 2098 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 A0A0A6YYK5 440 aaPredicted RBP10.1□□□□□ -0.79
VPS29-208ENST00000550267 LOC285095A0A1B0GVY8 99 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 KDELR1P24390 212 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 TDGF1P3P51864 188 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 WNT3AP56704 352 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 ZIC1Q15915 447 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 ZNF630Q2M218 657 aaPredicted RBP10.1□□□□□ -0.79
VPS29-208ENST00000550267 TBCELQ5QJ74 424 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 IRAK1BP1Q5VVH5 260 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 FCRL6Q6DN72 434 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 KDELC1Q6UW63 502 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 LINC00696Q6ZRV3 163 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 GLT6D1Q7Z4J2 308 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 MRGPRGQ86SM5 289 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 AMIGO1Q86WK6 493 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 ADGRF3Q8IZF5 1079 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 ZNF655Q8N720 491 aaPredicted RBP10.1□□□□□ -0.79
VPS29-208ENST00000550267 BCORP1Q8N888 145 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 PHC3Q8NDX5 983 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 HM13Q8TCT9 377 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 ZNF398Q8TD17 642 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 BLOC1S5Q8TDH9 187 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 CCDC120Q96HB5 630 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 LINC00615Q96LM1 132 aaPredicted RBP10.1□□□□□ -0.79
VPS29-208ENST00000550267 CCM2Q9BSQ5 444 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 HGH1Q9BTY7 390 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 EPS8L2Q9H6S3 715 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 CHST11Q9NPF2 352 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 BRD7Q9NPI1 651 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 SLC22A11Q9NSA0 550 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 SUCOQ9UBS9 1254 aaKnown RBP10.1□□□□□ -0.79
VPS29-208ENST00000550267 CDC23Q9UJX2 597 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 PKP3Q9Y446 797 aa10.1□□□□□ -0.79
VPS29-208ENST00000550267 TRGV8A0A0C4DH27 118 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 KLHL33A6NCF5 533 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 SOCS6O14544 535 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 PCDH17O14917 1159 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 ZSCAN9O15535 394 aaPredicted RBP10.09□□□□□ -0.79
VPS29-208ENST00000550267 PROSCO94903 275 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 PRAMEF1O95521 474 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 H2AFB1P0C5Y9 115 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 H2AFB2P0C5Z0 115 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 PYGMP11217 842 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 MMP11P24347 488 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 CD68P34810 354 aaPredicted RBP10.09□□□□□ -0.79
VPS29-208ENST00000550267 TMPRSS15P98073 1019 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 PRKG2Q13237 762 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 PDK1Q15118 436 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 PRKD1Q15139 912 aaPredicted RBP10.09□□□□□ -0.79
VPS29-208ENST00000550267 TESK1Q15569 626 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 TEX44Q53QW1 395 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 VWA2Q5GFL6 755 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 ZNF324BQ6AW86 544 aaPredicted RBP10.09□□□□□ -0.79
VPS29-208ENST00000550267 RPUSD3Q6P087 351 aaKnown RBP10.09□□□□□ -0.79
VPS29-208ENST00000550267 SPESP1Q6UW49 350 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 HOOK3Q86VS8 718 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 ZNF808Q8N4W9 903 aaPredicted RBP10.09□□□□□ -0.79
VPS29-208ENST00000550267 OR1N1Q8NGS0 311 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.09□□□□□ -0.79
VPS29-208ENST00000550267 MAGEB10Q96LZ2 347 aaPredicted RBP10.09□□□□□ -0.79
VPS29-208ENST00000550267 TEKT5Q96M29 485 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 OLFM3Q96PB7 478 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 LHPPQ9H008 270 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 TFB2MQ9H5Q4 396 aaKnown RBP10.09□□□□□ -0.79
VPS29-208ENST00000550267 IRAK4Q9NWZ3 460 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 HACD3Q9P035 362 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 FAM153AQ9UHL3 310 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 HS3ST3B1Q9Y662 390 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 F8P00451 2351 aa10.09□□□□□ -0.79
VPS29-208ENST00000550267 LRRD1A4D1F6 860 aa10.08□□□□□ -0.8
VPS29-208ENST00000550267 IFRD1O00458 451 aaPredicted RBP10.08□□□□□ -0.8
VPS29-208ENST00000550267 CCL21O00585 134 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms