RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 AASDHPPTQ9NRN7 309 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 SLAMF8Q9P0V8 285 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 ZNF451Q9Y4E5 1061 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 SMCHD1A6NHR9 2005 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 AGTR2P50052 363 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 BEX3Q00994 111 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 LCN1P1Q5VSP4 162 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 ZNF614Q8N883 585 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 MTMR14Q8NCE2 650 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 TEPSINQ96N21 525 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 FRMD6Q96NE9 622 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 SERPINB11Q96P15 392 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 ZNF195O14628 629 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 PER2O15055 1255 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 KPNA5O15131 536 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 CREG1O75629 220 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 STBD1O95210 358 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 GSTM5P46439 218 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 PSEN2P49810 448 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 MVKQ03426 396 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 TARBP2Q15633 366 aaKnown RBP13.96□□□□□ -0.17
LIMS1-215ENST00000544547 UNC50Q53HI1 259 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 ZNF789Q5FWF6 425 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 DPY19L3Q6ZPD9 716 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 TMEM199Q8N511 208 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 OR6Q1Q8NGQ2 317 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 SLC38A4Q969I6 547 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 PRAMEF33A0A0G2JMD5 474 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 PRAMEF10O60809 474 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 C22orf31O95567 290 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 VIPP01282 170 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 RPS3P23396 243 aaKnown RBP eCLIP13.96□□□□□ -0.174e-8■■■■□ 22.1
LIMS1-215ENST00000544547 GADD45AP24522 165 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 FOXA1P55317 472 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 RACK1P63244 317 aaKnown RBP13.96□□□□□ -0.17
LIMS1-215ENST00000544547 CNTN1Q12860 1018 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 STARD3Q14849 445 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 WSCD2Q2TBF2 565 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 OR2T5Q6IEZ7 315 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 TXNDC11Q6PKC3 985 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 BLOC1S3Q6QNY0 202 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 OR2T29Q8NH02 315 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 ZNF641Q96N77 438 aaPredicted RBP13.96□□□□□ -0.17
LIMS1-215ENST00000544547 TINF2Q9BSI4 451 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 FAM126AQ9BYI3 521 aaPredicted RBP13.96□□□□□ -0.17
LIMS1-215ENST00000544547 LTB4R2Q9NPC1 389 aa13.96□□□□□ -0.17
LIMS1-215ENST00000544547 THG1LQ9NWX6 298 aaKnown RBP13.96□□□□□ -0.17
LIMS1-215ENST00000544547 KIAA1551Q9HCM1 1747 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 PQBP1O60828 265 aaKnown RBP13.96□□□□□ -0.18
LIMS1-215ENST00000544547 SULT1C4O75897 302 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 UQCRC1P31930 480 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 DNAJB13P59910 316 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 FOXM1Q08050 763 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 SPANXN4Q5MJ08 99 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 LSMEM2Q8N112 164 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 LRRC52Q8N7C0 313 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 CELF2-AS1Q8N7Q2 184 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 B3GALT6Q96L58 329 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 SLC39A8Q9C0K1 460 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 POLR3BQ9NW08 1133 aaPredicted RBP13.96□□□□□ -0.18
LIMS1-215ENST00000544547 AP3M1Q9Y2T2 418 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 LYVE1Q9Y5Y7 322 aa13.96□□□□□ -0.18
LIMS1-215ENST00000544547 A0A1W2PQ67 120 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 OR10H3O60404 316 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 OR2B3O76000 313 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 MYL9P24844 172 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 RPS7P62081 194 aaKnown RBP13.95□□□□□ -0.18
LIMS1-215ENST00000544547 TRNP1Q6NT89 227 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 GALNT10Q86SR1 603 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 IPCEF1Q8WWN9 437 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-215ENST00000544547 FCGR1BQ92637 280 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 CYP2S1Q96SQ9 504 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 ADAM2Q99965 735 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 KIFC1Q9BW19 673 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 MMP28Q9H239 520 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 C1orf109Q9NX04 203 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 MAPRE3Q9UPY8 281 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 PCDHGB6Q9Y5F9 930 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 ARL5AQ9Y689 179 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 ECI2O75521 394 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 HLA-DQB2P05538 268 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 BOP1Q14137 746 aaKnown RBP13.95□□□□□ -0.18
LIMS1-215ENST00000544547 PTGR1Q14914 329 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 SDHAF4Q5VUM1 108 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 FAM217AQ8IXS0 508 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 DTWD1Q8N5C7 304 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 SIDT2Q8NBJ9 832 aaKnown RBP13.95□□□□□ -0.18
LIMS1-215ENST00000544547 CHDHQ8NE62 594 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-215ENST00000544547 FAM83FQ8NEG4 500 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-215ENST00000544547 RHOXF1Q8NHV9 184 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 SLCO4A1Q96BD0 722 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 POLR2J2Q9GZM3 115 aaKnown RBP13.95□□□□□ -0.18
LIMS1-215ENST00000544547 SCNN1GP51170 649 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 SMN1Q16637 294 aaKnown RBP13.95□□□□□ -0.18
LIMS1-215ENST00000544547 CCSAPQ6IQ19 270 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-215ENST00000544547 DCLRE1AQ6PJP8 1040 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 CXCL17Q6UXB2 119 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 GPR156Q8NFN8 814 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 ANKRD49Q8WVL7 239 aa13.95□□□□□ -0.18
LIMS1-215ENST00000544547 TADA1Q96BN2 335 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms