RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 VRK3Q8IV63 474 aa14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 DNAJC22Q8N4W6 341 aa14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 C2orf73Q8N5S3 287 aaPredicted RBP14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 LINC01555Q8NAE3 123 aa14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 LKAAEAR1Q8TD35 194 aa14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 CDKN2AIPNLQ96HQ2 116 aa14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 MENTQ9BUN1 341 aa14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 ILKAPQ9H0C8 392 aaPredicted RBP14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 SLC6A20Q9NP91 592 aa14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 SMARCAL1Q9NZC9 954 aa14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 IFT80Q9P2H3 777 aaPredicted RBP14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 G3BP2Q9UN86 482 aaKnown RBP14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 PCDHA3Q9Y5H8 950 aa14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 APCP25054 2843 aa14.89□□□□□ -0.03
CLSTN3-213ENST00000541953 SLC5A10A0PJK1 596 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 KRT87PA6NCN2 255 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 MED26O95402 600 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 HBQ1P09105 142 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 TPM1P09493 284 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 MAGP20916 626 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 MCM3P25205 808 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 FOXN2P32314 431 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 SHMT2P34897 504 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 PTPN7P35236 360 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 PRPSAP1Q14558 356 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 SHISA6Q6ZSJ9 500 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 TAX1BP1Q86VP1 789 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 CNGA4Q8IV77 575 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 CLEC1AQ8NC01 280 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 PROKR1Q8TCW9 393 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 HEXDCQ8WVB3 486 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 ELMO1Q92556 727 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 IMPACTQ9P2X3 320 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 NDOR1Q9UHB4 597 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 SLC5A6Q9Y289 635 aa14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 R3HDM2Q9Y2K5 976 aaKnown RBP14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 REXO2Q9Y3B8 237 aaKnown RBP14.88□□□□□ -0.03
CLSTN3-213ENST00000541953 DIDO1Q9BTC0 2240 aaKnown RBP14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 CCDC162PA2VCL2 907 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 SOCS6O14544 535 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 NRP2O60462 931 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 GLRBP48167 497 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 SOX8P57073 446 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 COPS2P61201 443 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 CACNG1Q06432 222 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 GRB7Q14451 532 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 LYPLAL1Q5VWZ2 237 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 METTL27Q8N6F8 245 aaPredicted RBP14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 AMER2Q8N7J2 671 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 FAM71DQ8N9W8 422 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 OR5K2Q8NHB8 316 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 UBE2Q2Q8WVN8 375 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 N4BP2L2Q92802 583 aaPredicted RBP14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.87□□□□□ -0.031e-7■■■■■ 35.3
CLSTN3-213ENST00000541953 FER1L6-AS2Q96M78 137 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 C5orf34Q96MH7 638 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 IL17FQ96PD4 163 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 SPSB2Q99619 263 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 C19orf43Q9BQ61 176 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 CHRNA10Q9GZZ6 450 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 VPS37BQ9H9H4 285 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 SLC2A6Q9UGQ3 507 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 GPN3Q9UHW5 284 aaPredicted RBP14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 FBXL4Q9UKA2 621 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 NOVA2Q9UNW9 492 aaKnown RBP14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 COPG1Q9Y678 874 aaKnown RBP14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 AP1M2Q9Y6Q5 423 aa14.87□□□□□ -0.03
CLSTN3-213ENST00000541953 TCRBV7S2A1N4TA0A589 114 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 MROH6A6NGR9 719 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 ISM1B1AKI9 464 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 AGPSO00116 658 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 PEX12O00623 359 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 LIN7AO14910 233 aaPredicted RBP14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 AP2A2O94973 939 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 PSMA3P25788 255 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 MSNP26038 577 aaKnown RBP14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 CTNNA2P26232 953 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 PKLRP30613 574 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 SEMA3AQ14563 771 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 C1QL3Q5VWW1 255 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 PACS1Q6VY07 963 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 HOOK3Q86VS8 718 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 TBC1D21Q8IYX1 336 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 OR13J1Q8NGT2 312 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 PTERQ96BW5 349 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 AP1M1Q9BXS5 423 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 TXLNGQ9NUQ3 528 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 IRAK4Q9NWZ3 460 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 EURLQ9NYK6 297 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 CTSFQ9UBX1 484 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 EFR3BQ9Y2G0 817 aa14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.86□□□□□ -0.03
CLSTN3-213ENST00000541953 A0A0U1RQJ8 604 aa14.85□□□□□ -0.03
CLSTN3-213ENST00000541953 SOWAHDA6NJG2 315 aa14.85□□□□□ -0.03
CLSTN3-213ENST00000541953 IQCF5A8MTL0 148 aa14.85□□□□□ -0.03
CLSTN3-213ENST00000541953 MAP3K7O43318 606 aa14.85□□□□□ -0.03
CLSTN3-213ENST00000541953 ALPPP05187 535 aa14.85□□□□□ -0.03
CLSTN3-213ENST00000541953 PRF1P14222 555 aa14.85□□□□□ -0.03
CLSTN3-213ENST00000541953 ITGA3P26006 1051 aa14.85□□□□□ -0.03
CLSTN3-213ENST00000541953 GRIA1P42261 906 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms