RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 USP45Q70EL2 814 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ARMC8Q8IUR7 673 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 GPR65Q8IYL9 337 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 C2orf73Q8N5S3 287 aaPredicted RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 NELL1Q92832 810 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 PYCR2Q96C36 320 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 EBPLQ9BY08 206 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 TREX1Q9NSU2 369 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 CLN6Q9NWW5 311 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 FCF1Q9Y324 198 aaKnown RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 AQP12BA6NM10 295 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 PCDH8O95206 1070 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 MMP2P08253 660 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 PABPC4LP0CB38 370 aaKnown RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 GABRB3P28472 473 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 RPIAP49247 311 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 HERVK_113P63132 956 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 CSNK2BP67870 215 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ILF2Q12905 390 aaKnown RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 SLC2A7Q6PXP3 512 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 PTCHD4Q6ZW05 846 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 CHSY3Q70JA7 882 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 HDDC2Q7Z4H3 204 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 AKAP14Q86UN6 197 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 CEP97Q8IW35 865 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 AQP12AQ8IXF9 295 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 LIX1Q8N485 282 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ANKLE1Q8NAG6 615 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 TRPV3Q8NET8 790 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 RAB2BQ8WUD1 216 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 AARSD1Q9BTE6 412 aaKnown RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ERVK-6Q9BXR3 956 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 SAMD4AQ9UPU9 718 aaKnown RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 TESMINQ9Y4I5 508 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ASB3Q9Y575 518 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 VWA8A3KMH1 1905 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 NLRC5Q86WI3 1866 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 KRT87PA6NCN2 255 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 HTRA2O43464 458 aaPredicted RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 DIRAS1O95057 198 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 PRAMEF1O95521 474 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 SLC35E2BP0CK96 405 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 IL7RP16871 459 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 CSKP41240 450 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 STT3AP46977 705 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 CREB5Q02930 508 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 TRAP1Q12931 704 aaKnown RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 SETMARQ53H47 684 aaPredicted RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 C1orf53Q5VUE5 145 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 RD3Q7Z3Z2 195 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ZDHHC21Q8IVQ6 265 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 YAF2Q8IY57 180 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 PGBD3Q8N328 593 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 HM13Q8TCT9 377 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 FATE1Q969F0 183 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 C1GALT1C1Q96EU7 318 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 NLNQ9BYT8 704 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 CCNB1IP1Q9NPC3 277 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 IL23AQ9NPF7 189 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 RAPGEFL1Q9UHV5 662 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ENOPH1Q9UHY7 261 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 INSL6Q9Y581 213 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 CDC7O00311 574 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 CXCR6O00574 342 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 AIREO43918 545 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ERAL1O75616 437 aaKnown RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 PRKD3O94806 890 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 PAPSS2O95340 614 aaPredicted RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 SERPINA1P01009 418 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 TRBC1P01850 177 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 MNX1P50219 401 aaPredicted RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 UFM1P61960 85 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 GTF2H2Q13888 395 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 PYDC2Q56P42 97 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ZNF789Q5FWF6 425 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ATXN7L2Q5T6C5 722 aaPredicted RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 GTF2H2CQ6P1K8 395 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 DPP10Q8N608 796 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 SLC13A3Q8WWT9 602 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 TMBIM1Q969X1 311 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ZNF689Q96CS4 500 aaPredicted RBP9.78□□□□□ -0.84
TRAF1-202ENST00000540010 NSMCE3Q96MG7 304 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 RANBP9Q96S59 729 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 LRRC3Q9BY71 257 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 C20orf27Q9GZN8 174 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 MFSD1Q9H3U5 465 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 ATP13A3Q9H7F0 1226 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 WBP1LQ9NX94 342 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 GSTK1Q9Y2Q3 226 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 KCNE2Q9Y6J6 123 aa9.78□□□□□ -0.84
TRAF1-202ENST00000540010 SNNO75324 88 aaPredicted RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 EPOP01588 193 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 PTPRDP23468 1912 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 ARNTP27540 789 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 RGRP47804 291 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 ANXA11P50995 505 aaKnown RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 POLR2LP62875 67 aaKnown RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 PTSQ03393 145 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 PPIGQ13427 754 aaKnown RBP eCLIP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 DAG1Q14118 895 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms