RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 PTCHD3Q3KNS1 767 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 PRAMEF17Q5VTA0 474 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 RHBDD2Q6NTF9 364 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 TLDC1Q6P9B6 456 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 TTC23LQ6PF05 361 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 UNC5DQ6UXZ4 953 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 TRIM73Q86UV7 250 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 DCUN1D3Q8IWE4 304 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 RAB42Q8N4Z0 105 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 FAM26EQ8N5C1 309 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 MAIP1Q8WWC4 291 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 OR2A14Q96R47 310 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 NDC1Q9BTX1 674 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 CARD6Q9BX69 1037 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 RAB11FIP5Q9BXF6 653 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 AP1M1Q9BXS5 423 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 MLXIPLQ9NP71 852 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 CASS4Q9NQ75 786 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 EIF2B3Q9NR50 452 aaKnown RBP12.67□□□□□ -0.38
RTN3-207ENST00000536011 CATSPERZQ9NTU4 200 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 INTS7Q9NVH2 962 aaKnown RBP12.67□□□□□ -0.38
RTN3-207ENST00000536011 NDOR1Q9UHB4 597 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 GUCA1BQ9UMX6 200 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 VPS4AQ9UN37 437 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 PLAAQ9Y263 795 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 ZKSCAN5Q9Y2L8 839 aa12.67□□□□□ -0.38
RTN3-207ENST00000536011 RP1L1Q8IWN7 2480 aaPredicted RBP12.66□□□□□ -0.38
RTN3-207ENST00000536011 BHMG1C9JSJ3 638 aaPredicted RBP12.66□□□□□ -0.38
RTN3-207ENST00000536011 PEX12O00623 359 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 KPNA5O15131 536 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 PFDN6O15212 129 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 OR1I1O60431 355 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 CEACAM4O75871 244 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 CAPN1P07384 714 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 PKLRP30613 574 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 FOLR3P41439 243 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 MLLT10P55197 1068 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 DCDP81605 110 aaKnown RBP12.66□□□□□ -0.38
RTN3-207ENST00000536011 HSPA14Q0VDF9 509 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 LRRC6Q86X45 466 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 MPP5Q8N3R9 675 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 C1orf54Q8WWF1 131 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 DLG3Q92796 817 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 COL26A1Q96A83 441 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 FER1L6-AS2Q96M78 137 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 PANX3Q96QZ0 392 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 IL22Q9GZX6 179 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 GPR83Q9NYM4 423 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 IFT80Q9P2H3 777 aaPredicted RBP12.66□□□□□ -0.38
RTN3-207ENST00000536011 ANKMY1Q9P2S6 941 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 SLC2A6Q9UGQ3 507 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 GNPTGQ9UJJ9 305 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 PLCL2Q9UPR0 1127 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 NAV2Q8IVL1 2488 aa12.66□□□□□ -0.38
RTN3-207ENST00000536011 A0A0U1RQJ8 604 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 PRMT5O14744 637 aaPredicted RBP12.65□□□□□ -0.38
RTN3-207ENST00000536011 FKBP9O95302 570 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 S1PR4O95977 384 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 PDGFAP04085 211 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 ALPPP05187 535 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 OTX2P32243 289 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 CSE1LP55060 971 aaKnown RBP12.65□□□□□ -0.38
RTN3-207ENST00000536011 SNX1Q13596 522 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 CCNG2Q16589 344 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 DEFB110Q30KQ9 67 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 PCID2Q5JVF3 399 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 MLIPQ5VWP3 458 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 ZNF385CQ66K41 422 aaPredicted RBP12.65□□□□□ -0.38
RTN3-207ENST00000536011 PTRHD1Q6GMV3 140 aaKnown RBP12.65□□□□□ -0.38
RTN3-207ENST00000536011 LCN10Q6JVE6 187 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 DRICH1Q6PGQ1 229 aaPredicted RBP12.65□□□□□ -0.38
RTN3-207ENST00000536011 GSTA5Q7RTV2 222 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 GLIS1Q8NBF1 620 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 CLEC1AQ8NC01 280 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 GALNT11Q8NCW6 608 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 CPT1CQ8TCG5 803 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 NRTNQ99748 197 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 FAM60AQ9NP50 221 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 SPHK1Q9NYA1 384 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 BFARQ9NZS9 450 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 SLC39A10Q9ULF5 831 aa12.65□□□□□ -0.38
RTN3-207ENST00000536011 DOPEY2Q9Y3R5 2298 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 SPTBP11277 2137 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 CLEC18AA5D8T8 446 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 ZNF185O15231 689 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 CD3EAPO15446 510 aaKnown RBP12.64□□□□□ -0.39
RTN3-207ENST00000536011 GPC4O75487 556 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 NDUFS3O75489 264 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 PIM1P11309 404 aaPredicted RBP12.64□□□□□ -0.39
RTN3-207ENST00000536011 CD9P21926 228 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 AOAHP28039 575 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 CCR7P32248 378 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 GRIA1P42261 906 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 ARSFP54793 590 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 BASP1P80723 227 aaKnown RBP12.64□□□□□ -0.39
RTN3-207ENST00000536011 ATP1A4Q13733 1029 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 SSPNQ14714 243 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 ZIC1Q15915 447 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 KYNUQ16719 465 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 NKAIN1Q4KMZ8 207 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms