RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 WDR47O94967 919 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 ARHGEF15O94989 841 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 C8GP07360 202 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 UMPSP11172 480 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 NELFEP18615 380 aaKnown RBP13.05□□□□□ -0.32
VPS33B-202ENST00000535906 NNMTP40261 264 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 ALDH3B2P48448 385 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 SELPLGQ14242 412 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 ATP6AP1Q15904 470 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 CDKL4Q5MAI5 379 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 RALGPS2Q86X27 583 aaPredicted RBP13.05□□□□□ -0.32
VPS33B-202ENST00000535906 FAM47BQ8NA70 645 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 OTUB2Q96DC9 234 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 RIOK2Q9BVS4 552 aaKnown RBP13.05□□□□□ -0.32
VPS33B-202ENST00000535906 IL36AQ9UHA7 158 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 SLC8A2Q9UPR5 921 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 EIF3LQ9Y262 564 aaKnown RBP13.05□□□□□ -0.32
VPS33B-202ENST00000535906 NEUROG3Q9Y4Z2 214 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 LINC01553A4QN01 128 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 GRXCR2A6NFK2 248 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 OR2AG2A6NM03 316 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 H3BSA7 217 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 GFYI3L273 518 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 PDLIM1O00151 329 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 PLXNA2O75051 1894 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 C7P10643 843 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 CDH2P19022 906 aaPredicted RBP13.05□□□□□ -0.32
VPS33B-202ENST00000535906 MYF6P23409 242 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 OR4D2P58180 307 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 MTPNP58546 118 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 DHCR24Q15392 516 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 IMPG1Q17R60 797 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 PTCHD3Q3KNS1 767 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 AASDHQ4L235 1098 aaPredicted RBP13.05□□□□□ -0.32
VPS33B-202ENST00000535906 TCEAL5Q5H9L2 206 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 PLEKHS1Q5SXH7 462 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 TMTC4Q5T4D3 741 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 HENMT1Q5T8I9 393 aaKnown RBP13.05□□□□□ -0.32
VPS33B-202ENST00000535906 NEK5Q6P3R8 708 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 SUSD1Q6UWL2 747 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 SPRED1Q7Z699 444 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 LIX1Q8N485 282 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 PAPD5Q8NDF8 572 aaKnown RBP13.05□□□□□ -0.32
VPS33B-202ENST00000535906 HIC2Q96JB3 615 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 CGREF1Q99674 301 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 ADI1Q9BV57 179 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 ACPTQ9BZG2 426 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 LRTM1Q9HBL6 345 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 FAM8A1Q9UBU6 413 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 FBXO10Q9UK96 956 aa13.05□□□□□ -0.32
VPS33B-202ENST00000535906 RANBP2P49792 3224 aaKnown RBP13.05□□□□□ -0.32
VPS33B-202ENST00000535906 RNF103-CHMP3A0A140T963 221 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 TMEM202A6NGA9 273 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 SOBPA7XYQ1 873 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 PDYNP01213 254 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 ASLP04424 464 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 HNRNPA1P09651 372 aaKnown RBP eCLIP13.04□□□□□ -0.32
VPS33B-202ENST00000535906 HIST1H2AGP0C0S8 130 aaPredicted RBP13.04□□□□□ -0.32
VPS33B-202ENST00000535906 MPC1LP0DKB6 136 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 HIST1H2ADP20671 130 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 HRH2P25021 359 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 HTR1EP28566 365 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 DCDC1P59894 354 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 MESP2Q0VG99 397 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 MERTKQ12866 999 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 MAD2L1Q13257 205 aaPredicted RBP13.04□□□□□ -0.32
VPS33B-202ENST00000535906 FXNQ16595 210 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 FAM174BQ3ZCQ3 159 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 TMEM259Q4ZIN3 620 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 C12orf40Q86WS4 652 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 KRTCAP2Q8N6L1 136 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 LEMD2Q8NC56 503 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 ITFG1Q8TB96 612 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 ELMO1Q92556 727 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 ZNF707Q96C28 371 aaPredicted RBP13.04□□□□□ -0.32
VPS33B-202ENST00000535906 HIST1H2AHQ96KK5 128 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 HIST1H2AJQ99878 128 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 H2AFJQ9BTM1 129 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 RPF2Q9H7B2 306 aaKnown RBP13.04□□□□□ -0.32
VPS33B-202ENST00000535906 OAZ3Q9UMX2 235 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 CROCCQ5TZA2 2017 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 TSPAN11A1L157 253 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 IFRD1O00458 451 aaPredicted RBP13.04□□□□□ -0.32
VPS33B-202ENST00000535906 ACOX3O15254 700 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 RASAL1O95294 804 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 CYP17A1P05093 508 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 CISD3P0C7P0 127 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 SLC6A12P48065 614 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 DGKGP49619 791 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 NEK2P51955 445 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 PWP1Q13610 501 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 SMU1Q2TAY7 513 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 KCTD21Q4G0X4 260 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 ZNF805Q5CZA5 627 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 LRRC70Q7Z2Q7 622 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 TBC1D21Q8IYX1 336 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 DTNBP1Q96EV8 351 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 SLC29A3Q9BZD2 475 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 C1orf109Q9NX04 203 aa13.04□□□□□ -0.32
VPS33B-202ENST00000535906 VAPAQ9P0L0 249 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms