RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 TSSK1BQ9BXA7 367 aa16.23■□□□□ 0.19
CPSF1-207ENST00000531727 AP1M1Q9BXS5 423 aa16.23■□□□□ 0.19
CPSF1-207ENST00000531727 TSGA10Q9BZW7 698 aa16.23■□□□□ 0.19
CPSF1-207ENST00000531727 SPRTNQ9H040 489 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-207ENST00000531727 G3BP2Q9UN86 482 aaKnown RBP16.23■□□□□ 0.19
CPSF1-207ENST00000531727 CDYLQ9Y232 598 aa16.23■□□□□ 0.19
CPSF1-207ENST00000531727 ZNF185O15231 689 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 GPC4O75487 556 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 KLF7O75840 302 aaPredicted RBP16.22■□□□□ 0.19
CPSF1-207ENST00000531727 APRTP07741 180 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 PKLRP30613 574 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 RAB28P51157 221 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 RRADP55042 308 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 HSPA14Q0VDF9 509 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 SNX1Q13596 522 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 C1orf189Q5VU69 101 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 VRK3Q8IV63 474 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 DNAJC22Q8N4W6 341 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 EFCAB3Q8N7B9 438 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 CCDC89Q8N998 374 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 PPHLN1Q8NEY8 458 aaKnown RBP16.22■□□□□ 0.19
CPSF1-207ENST00000531727 CPT1CQ8TCG5 803 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 PROKR1Q8TCW9 393 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 LKAAEAR1Q8TD35 194 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 ASZ1Q8WWH4 475 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 GBP5Q96PP8 586 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 NUDT9Q9BW91 350 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 CARD6Q9BX69 1037 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 PAK5Q9P286 719 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 GUCA1BQ9UMX6 200 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 SRPK3Q9UPE1 567 aa16.22■□□□□ 0.19
CPSF1-207ENST00000531727 MED13Q9UHV7 2174 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 ZSCAN9O15535 394 aaPredicted RBP16.21■□□□□ 0.19
CPSF1-207ENST00000531727 KRT86O43790 486 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 DPM1O60762 260 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 SORBS2O94875 1100 aaKnown RBP16.21■□□□□ 0.19
CPSF1-207ENST00000531727 RPN2P04844 631 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 CTSBP07858 339 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 CD63P08962 238 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 OTX2P32243 289 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 DCDP81605 110 aaKnown RBP16.21■□□□□ 0.19
CPSF1-207ENST00000531727 SSPNQ14714 243 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 KYNUQ16719 465 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 AARS2Q5JTZ9 985 aaKnown RBP16.21■□□□□ 0.19
CPSF1-207ENST00000531727 MLIPQ5VWP3 458 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 TLDC1Q6P9B6 456 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 HPS6Q86YV9 775 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 ZNF655Q8N720 491 aaPredicted RBP16.21■□□□□ 0.19
CPSF1-207ENST00000531727 GALNT11Q8NCW6 608 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 IP6K3Q96PC2 410 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 MENTQ9BUN1 341 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 CATSPERZQ9NTU4 200 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 TXLNGQ9NUQ3 528 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 GPR83Q9NYM4 423 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 DHCR7Q9UBM7 475 aaKnown RBP16.21■□□□□ 0.19
CPSF1-207ENST00000531727 GPN3Q9UHW5 284 aaPredicted RBP16.21■□□□□ 0.19
CPSF1-207ENST00000531727 ANAPC5Q9UJX4 755 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 PLCL2Q9UPR0 1127 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 FER1L5A0AVI2 2057 aa16.21■□□□□ 0.19
CPSF1-207ENST00000531727 PTPN13Q12923 2485 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 A6NL46 340 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 IQCF5A8MTL0 148 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 VPS4BO75351 444 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 APOA4P06727 396 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 ZSCAN5DPP0CG00 497 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 RPL22P35268 128 aaKnown RBP16.2■□□□□ 0.18
CPSF1-207ENST00000531727 TTPAP49638 278 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 PCID2Q5JVF3 399 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 MEI1Q5TIA1 1274 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 UNC5DQ6UXZ4 953 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 MRGPREQ86SM8 312 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 LDB1Q86U70 411 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-207ENST00000531727 DCUN1D3Q8IWE4 304 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 FAM20CQ8IXL6 584 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 LINC01555Q8NAE3 123 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 SMAD5Q99717 465 aaKnown RBP16.2■□□□□ 0.18
CPSF1-207ENST00000531727 EIF2B3Q9NR50 452 aaKnown RBP16.2■□□□□ 0.18
CPSF1-207ENST00000531727 CHRAC1Q9NRG0 131 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 MARCH4Q9P2E8 410 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-207ENST00000531727 IFT80Q9P2H3 777 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-207ENST00000531727 NDOR1Q9UHB4 597 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 VPS4AQ9UN37 437 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 MAP4K5Q9Y4K4 846 aa16.2■□□□□ 0.18
CPSF1-207ENST00000531727 GOLGA6L6A8MZA4 724 aa16.19■□□□□ 0.18
CPSF1-207ENST00000531727 PRMT5O14744 637 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-207ENST00000531727 CD3EAPO15446 510 aaKnown RBP16.19■□□□□ 0.18
CPSF1-207ENST00000531727 SLCO2B1O94956 709 aa16.19■□□□□ 0.18
CPSF1-207ENST00000531727 MAGP20916 626 aa16.19■□□□□ 0.18
CPSF1-207ENST00000531727 CD9P21926 228 aa16.19■□□□□ 0.18
CPSF1-207ENST00000531727 AOAHP28039 575 aa16.19■□□□□ 0.18
CPSF1-207ENST00000531727 FOLR3P41439 243 aa16.19■□□□□ 0.18
CPSF1-207ENST00000531727 UQCRFS1P47985 274 aa16.19■□□□□ 0.18
CPSF1-207ENST00000531727 GRB7Q14451 532 aa16.19■□□□□ 0.18
CPSF1-207ENST00000531727 TMED2Q15363 201 aa16.19■□□□□ 0.18
CPSF1-207ENST00000531727 RPS6KA1Q15418 735 aa16.19■□□□□ 0.18
CPSF1-207ENST00000531727 SIX1Q15475 284 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-207ENST00000531727 CCNG2Q16589 344 aa16.19■□□□□ 0.18
CPSF1-207ENST00000531727 JMJD6Q6NYC1 403 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-207ENST00000531727 DRICH1Q6PGQ1 229 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-207ENST00000531727 KRT222Q8N1A0 295 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms